PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028111321.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 502aa    MW: 56229.8 Da    PI: 6.3009
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028111321.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.44.3e-1091215013374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + Lle+A+a+++++ +++q+l++ l+el+sp+gd  q+la+yf++AL +r+++s++++ ++l + ++++++ +++ +++  f+e+sP+ +f+h++
  XP_028111321.1 121 NILLEAARAIANKNSARVQQLMWMLNELSSPYGDIDQKLASYFLQALFSRVTDSGERTHRTLISASEKNSSFESTRKMVLKFQEASPWTTFGHVA 215
                     689********************************************************9995555554443333344445************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvak. 184
                     +N aI+ea+ege ++HiiD++ ++++QWp+Ll+aLa+R++++p+lR+T+v+s+  +        ++ ++e+g+r++kfA+ +gvpf+fnv++++ 
  XP_028111321.1 216 CNGAIMEAFEGEPKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVSAGGSggegaaaVQKVMKEIGNRMEKFARLMGVPFKFNVVHHSg 310
                     ***************************************************966558999999999*************************8888 PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nse...sFlerflealeyysalfdsleak 274
                     +l+ l+l++L++k +Eala+n+v +lh++     +++++rd v++++ksl+P++v+vve+ead+  ++    +F+++f e+l+++ + f+sle++
  XP_028111321.1 311 DLSGLNLSKLDIKDDEALAINCVGALHSVA----AVNNRRDVVISIFKSLNPRIVTVVEEEADLvvGDDdgfDFVKGFEESLRWFRVYFESLEES 401
                     *****************************8....888999*********************998644336779********************** PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                     +p++s+er ++Er+  gr++v++vac  ae++er+et+e+W++rl+  GF+pv++s+++ +++++llr++  ++ ++   e + ++l+Wk++p+v
  XP_028111321.1 402 FPKTSNERLMLERA-AGRAVVDLVACPAAESVERRETAERWSRRLHGGGFGPVSFSDEVCDDVRALLRRYReGWSMTQAAEAAGIFLTWKEQPVV 495
                     **************.********************************************************555566667888999********* PP

            GRAS 369 svSaWr 374
                     ++SaWr
  XP_028111321.1 496 WASAWR 501
                     *****8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    
MDTLFTLVTL QSHHHHHQPH PHHSFNSSTI TSSSSRSSRQ QQNHQSDEEC FNFFMDEEDF  60
SSSSSKHYYP YHHHQPPSTT TTTTTTTPPP HHHAFESAQF SFSPARDLNI EFASSGNWAS  120
NILLEAARAI ANKNSARVQQ LMWMLNELSS PYGDIDQKLA SYFLQALFSR VTDSGERTHR  180
TLISASEKNS SFESTRKMVL KFQEASPWTT FGHVACNGAI MEAFEGEPKL HIIDISNTYC  240
TQWPTLLEAL ATRTDETPHL RLTTVVSAGG SGGEGAAAVQ KVMKEIGNRM EKFARLMGVP  300
FKFNVVHHSG DLSGLNLSKL DIKDDEALAI NCVGALHSVA AVNNRRDVVI SIFKSLNPRI  360
VTVVEEEADL VVGDDDGFDF VKGFEESLRW FRVYFESLEE SFPKTSNERL MLERAAGRAV  420
VDLVACPAAE SVERRETAER WSRRLHGGGF GPVSFSDEVC DDVRALLRRY REGWSMTQAA  480
EAAGIFLTWK EQPVVWASAW RG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein