PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028110211.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 223aa    MW: 25723.7 Da    PI: 9.8552
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028110211.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.34.1e-181050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     ien+s r+ tf kR++gi+KK +ELS+LC+++++ iifs+
  XP_028110211.1 10 YIENESARKSTFKKRKKGIMKKVNELSTLCGVDACAIIFSP 50
                    59**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MTRKKVSLAY IENESARKST FKKRKKGIMK KVNELSTLCG VDACAIIFSP YDAEPEVWPS  60
HLGAQRIISR FRRMPELEQS RRMENQESYT RQRLTKAEEQ LRKQHKDNRH KEMTHLMFQC  120
LIGEGLQYLN MVDLHDLGVL LNQTMRDVDG RLELLTEAVL PQEMAMLNAM ARGENSFNAQ  180
MPSGMAMPTM QNQQPIRSLL RSNVHPGLDG NVAYTFPLQW SRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVSLAYIENESARKSTFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-62M-type_MADS family protein