PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028109973.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11738.4 Da    PI: 10.3172
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028109973.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.4e-291059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev vi++sstg+lye++s
  XP_028109973.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGVIVISSTGRLYEFAS 59
                    8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGVIVISS TGRLYEFASP  60
SMRSIFQRYN NEQENHQLLS PTSEAKVFFH EQLTYYPASF LH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.15e-42MIKC_MADS family protein