PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028109176.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 448aa MW: 48147.1 Da PI: 8.6022

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028109176.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028109176.1 47 FVCEICSKGFQRDQNLQLHRRGH 69 89*******************88 PP
2	zf-C2H2	11.5	0.00094	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +++ XP_028109176.1 123 WKCDKCSKKYAVQSDWKAHSKVC 145 58*****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MNDSTASGNQ IVPPKPEKKK RNLPGMPDPD SEVIALSPKS LLATNRFVCE ICSKGFQRDQ 60 NLQLHRRGHN LPWKLRQKSS KEVRKRVYVC PETSCVHHDP SRALGDLTGI KKHFCRKHGE 120 KKWKCDKCSK KYAVQSDWKA HSKVCGTKEY KCDCGTLFSR RDSFITHRAF CDALAEESTK 180 AVAPHEDSKI DIVASSPPSL RPTAEISSVL PIQNSEFREN PNPTQILDDA PVSCGNTSSS 240 SSNGSTSSSV FGSLFASSTN LQPQPAGFTN LIRSMSHPER VPDLTPSSST EPVSLCLNTN 300 HGSSIFGTAG QELEQYAPLP HPAMSATALL QKAAQMGAAV TNSSSLRGFG IASLTSSGEQ 360 HWDRRQIQPE SGSDWKELML GTQSVFGPKQ TILDLLGLGM AAGSSPTSGL SALMTSIGGG 420 GGGFDMATAT AATYGGGEFS GKDMERRS

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MNDSTASGNQ IVPPKPEKKK RNLPGMPDPD SEVIALSPKS LLATNRFVCE ICSKGFQRDQ  60
NLQLHRRGHN LPWKLRQKSS KEVRKRVYVC PETSCVHHDP SRALGDLTGI KKHFCRKHGE  120
KKWKCDKCSK KYAVQSDWKA HSKVCGTKEY KCDCGTLFSR RDSFITHRAF CDALAEESTK  180
AVAPHEDSKI DIVASSPPSL RPTAEISSVL PIQNSEFREN PNPTQILDDA PVSCGNTSSS  240
SSNGSTSSSV FGSLFASSTN LQPQPAGFTN LIRSMSHPER VPDLTPSSST EPVSLCLNTN  300
HGSSIFGTAG QELEQYAPLP HPAMSATALL QKAAQMGAAV TNSSSLRGFG IASLTSSGEQ  360
HWDRRQIQPE SGSDWKELML GTQSVFGPKQ TILDLLGLGM AAGSSPTSGL SALMTSIGGG  420
GGGFDMATAT AATYGGGEFS GKDMERRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-142	C2H2 family protein