PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028109144.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 22068.7 Da PI: 6.338 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.3 | 1.1e-37 | 14 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aC aCk++rrkC+k+C++ pyf ++q +++fa+vhk+FGasn +kll ++p ++r++a+ sl+yeA ar+rdPvyG+v+ +++lqqq+ +l+ae XP_028109144.1 14 ACGACKFMRRKCEKGCIFEPYFESDQagTAHFAAVHKVFGASNASKLLLKTPSHKRPEAVVSLCYEALARVRDPVYGCVSQLFSLQQQVINLQAE 108 7*********************9999555****************************************************************** PP DUF260 94 lallkee 100 lal++++ XP_028109144.1 109 LALVQAQ 115 ***9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence |
MRRGNNNGGG GGGACGACKF MRRKCEKGCI FEPYFESDQA GTAHFAAVHK VFGASNASKL 60 LLKTPSHKRP EAVVSLCYEA LARVRDPVYG CVSQLFSLQQ QVINLQAELA LVQAQRSTLQ 120 FLSLPPPQPQ SPSTTNAQSS SDLASTSNAS TTHFDPSTSM ELVSFCNPMD QEIDNGDDDD 180 DLQALAQEFV STYLPGVKSR PPSPH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 2e-47 | LBD family protein |