PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028108735.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 27357.8 Da PI: 9.8616 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.4 | 5.9e-16 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ t+ kR++g+ KK +ELS+LC+++ + ii+++ XP_028108735.1 10 FITNDSARKATYKKRKKGLTKKVSELSTLCGIDTCAIIYGP 50 89*************************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence |
MTRKKLKLAF ITNDSARKAT YKKRKKGLTK KVSELSTLCG IDTCAIIYGP YESQPEVWPN 60 TLGVQRVLAQ FKRMPEMEQS KKMVNQEIFI RQRIVKENEH LKKQHKDNRK KEMTEVMYKC 120 LSGRGLQNLV IADLHDLGWL IDQKLEEIDK KIESIKKTPF SDLSMVLMTS RSTNEMRQDQ 180 KPNLDLSMEA MQRPQWFNEW MNHPNEHMGF VGDEMVMPFG DNHNAMWSSV FFP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 3 | 25 | RKKLKLAFITNDSARKATYKKRK |
2 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-51 | M-type_MADS family protein |