PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028108393.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 533aa    MW: 60139.3 Da    PI: 4.5626
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028108393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS147.99.5e-461665322373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL +c ea++++++el++ +L+rl e a p+g ++qRla y+ + L ++l             +++    s++ +aa+++f++++P+ +f+h+
  XP_028108393.1 166 LHLLKACGEAMENQQKELVEVILKRLDEKACPKGIALQRLAYYLIRSLDQHLDY----------LTQE---ASKNYAAAFRAFYQIFPYGRFAHF 247
                     699*************************************************98..........2223...36788999**************** PP

            GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     taN  Il av ++ e +H++Dfd+++G+QWp+L++aL  ++  +  +Ri  v+ ++s+  +   e+ +  L + A + g++++ + +   ++e l
  XP_028108393.1 248 TANTLILGAVPEDaEVIHVVDFDMGEGVQWPPLIEALGRQR--QRAMRIISVKCEDSNgVNVHFEKAKALLFEHAFSSGLKLKVEEM---DMEGL 337
                     **********8885788********************9754..45899999999887779999*********************996...66666 PP

            GRAS 190 eleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvk.slsPk.....vvvv.....veqeadh.nsesFlerflealeyysalf 268
                     ++e+ ++k+    +E la n+++ l ++ +++ s +   +e+Lk+ + s++       +v++     +e+e+ + + + F   f   l +++al+
  XP_028108393.1 338 STEMKNIKKkcgvREWLAFNCMVGLPHMGRQRSSRQV--TEFLKIAQeSINTGkkdrgIVTFgdghgAEEETMMsEFHGFGSFFEGQLGHVTALL 430
                     6666666665688***************966666655..9****987356652334449999333223444444355689999999********* PP

            GRAS 269 dsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvksdgyrveee...sgsl 358
                     +s+e  +p +  e+ri +E  ++++ ++++ + e++e        ++Wr  l  ++G++++++s+++ +++k l+r+ ++  y v +e   ++++
  XP_028108393.1 431 ESMEWHMPVHLkEARIAMECLFVAPYVSSLACFEKFE-------EREWRGGLvPRMGLNALKMSKDVIAEVKELVREGDGA-YWVRSEgegENEV 517
                     *******988769999999999999999999999998.......467*9876268**********************9955.88874444599** PP

            GRAS 359 vlgWkdrpLvsvSaW 373
                     vl+  + pLv vS+W
  XP_028108393.1 518 VLCFLGTPLVRVSSW 532
                     *************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    
MEVMMLGQEL NQSWSYLKTI DSYFDEGGFH GFEMDTDIGN CQFSSLFLST TEDSSEVFAS  60
VPYISSANYD ESHSYPCWNE GFQALSPIQQ CLINLEESSI TSDENMAFDE VDGLICSWIG  120
SESGPQSQEL DKVIQIGPSS IDVESVHKPL FFPKEDMELD NQLSILHLLK ACGEAMENQQ  180
KELVEVILKR LDEKACPKGI ALQRLAYYLI RSLDQHLDYL TQEASKNYAA AFRAFYQIFP  240
YGRFAHFTAN TLILGAVPED AEVIHVVDFD MGEGVQWPPL IEALGRQRQR AMRIISVKCE  300
DSNGVNVHFE KAKALLFEHA FSSGLKLKVE EMDMEGLSTE MKNIKKKCGV REWLAFNCMV  360
GLPHMGRQRS SRQVTEFLKI AQESINTGKK DRGIVTFGDG HGAEEETMMS EFHGFGSFFE  420
GQLGHVTALL ESMEWHMPVH LKEARIAMEC LFVAPYVSSL ACFEKFEERE WRGGLVPRMG  480
LNALKMSKDV IAEVKELVRE GDGAYWVRSE GEGENEVVLC FLGTPLVRVS SWN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.17e-17GRAS family protein