PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028107381.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 237aa MW: 27257.9 Da PI: 7.6314 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.2 | 3.7e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+k rqvtfskRr+g++KKA ELS+LCd+e+a+i+fs +gkly +++ XP_028107381.1 9 KRIEDKNSRQVTFSKRRTGLIKKARELSILCDVEIALIVFSARGKLYQFCT 59 79***********************************************96 PP | |||||||
2 | K-box | 34.5 | 8.8e-13 | 82 | 168 | 10 | 96 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + +++++l++ + + ++ Lq qRh+ +++e+L++ eL q+e+qL+ l++ R kK++l+++ + l +ke++ + + ++k XP_028107381.1 82 SVQESKKLTEGYMDFSRGTNLLQMVQRHFEEQKIEQLDVAELTQVEHQLDAILRQTRIKKSQLMMKAVTALHEKEEQPRGGRQLMEK 168 556667888888888889999******************************************************997766665555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MGRGKVQLKR IEDKNSRQVT FSKRRTGLIK KARELSILCD VEIALIVFSA RGKLYQFCTG 60 DSLRKVLERY QIHKDAEVAG SSVQESKKLT EGYMDFSRGT NLLQMVQRHF EEQKIEQLDV 120 AELTQVEHQL DAILRQTRIK KSQLMMKAVT ALHEKEEQPR GGRQLMEKEI TAMINEATMD 180 DDCRRHQQQQ TQQGDPDMDL ELYGYTNNTN NNNSSTGSGG GGVYHHLQQE ESMFYLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-43 | MIKC_MADS family protein |