PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028106757.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 470aa MW: 54244.3 Da PI: 8.6082

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028106757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.2	6.8e-09	425	447	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 + lCrf+a+ G C+yGdrCk+ H XP_028106757.1 425 QRQLCRFYAQ-GRCHYGDRCKYLH 447 689*****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MQISEHSDVA AEKFHYNEED ESEYEECDAD DSGEDPTFEV VDKIRCRFSR LSTKNKPKSC 60 NIKEMEEGNE EDPDVVVEMV VPELGEEDQK SFEAVQKIIE VGQVEKLKVD QCKVYLRKHG 120 LRLTGNKDIL IERIKEHLDI LRGGGEKKYP ISSFVLNCKG DACTGDVVMF EQNVYEMFNI 180 ASRSAGGPPC GKRIVAGRIV KESYGAAKQQ HTFTIEVLWS EGEKPLPPLY PLLIKGRNLY 240 RLKTMRQRWD NEGERQKMIS EKHARGSLAR SNREARIQLK ETKKANTSVP IVNVPSQRIQ 300 QWQHLTNMPS RSLLQSQNHE PIMKSIPSHC QFQRQSHEQY TNSNNPLRRP LTNMNCSIQS 360 KDPYPFGSCP GSTSPLQSHN HERSMISYPL RIPIQRQGPE RSVNPNSSRH HKGNMNFSPT 420 KGPFQRQLCR FYAQGRCHYG DRCKYLHEYR GNLICGERTD KRWPSDLRYY

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MQISEHSDVA AEKFHYNEED ESEYEECDAD DSGEDPTFEV VDKIRCRFSR LSTKNKPKSC  60
NIKEMEEGNE EDPDVVVEMV VPELGEEDQK SFEAVQKIIE VGQVEKLKVD QCKVYLRKHG  120
LRLTGNKDIL IERIKEHLDI LRGGGEKKYP ISSFVLNCKG DACTGDVVMF EQNVYEMFNI  180
ASRSAGGPPC GKRIVAGRIV KESYGAAKQQ HTFTIEVLWS EGEKPLPPLY PLLIKGRNLY  240
RLKTMRQRWD NEGERQKMIS EKHARGSLAR SNREARIQLK ETKKANTSVP IVNVPSQRIQ  300
QWQHLTNMPS RSLLQSQNHE PIMKSIPSHC QFQRQSHEQY TNSNNPLRRP LTNMNCSIQS  360
KDPYPFGSCP GSTSPLQSHN HERSMISYPL RIPIQRQGPE RSVNPNSSRH HKGNMNFSPT  420
KGPFQRQLCR FYAQGRCHYG DRCKYLHEYR GNLICGERTD KRWPSDLRYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25440.1	1e-07	C3H family protein