PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028101419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 453aa MW: 49939.8 Da PI: 9.1462 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.5e-11 | 61 | 86 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G+ C+F+H+p XP_028101419.1 61 GEPDCSYYIRTGLCRFGAACRFNHPP 86 6899********************97 PP | |||||||
2 | zf-CCCH | 33.7 | 6e-11 | 107 | 131 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++t tCk+G++CkF+H++ XP_028101419.1 107 QPECQYYLKTATCKFGATCKFHHPR 131 799********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 8e-12 | 153 | 177 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_028101419.1 153 ETECAYYLRTGQCKFGSTCKFHHPQ 177 578********************97 PP | |||||||
4 | zf-CCCH | 37.7 | 3.4e-12 | 313 | 339 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG Ck+G+ C+F+H++ XP_028101419.1 313 PGQPDCQFYMKTGDCKFGAVCRFHHPR 339 5789*********************96 PP | |||||||
5 | zf-CCCH | 35.9 | 1.3e-11 | 360 | 385 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++r+G+Ck+G++CkF H++ XP_028101419.1 360 GEPSCIFYSRYGICKFGPSCKFDHPM 385 7889********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence |
MEVSLSWNST PEFRCPKPLS PTLLLPCLRL WMKVRFKYTL WQMNLRSSEI MESGPYPMRE 60 GEPDCSYYIR TGLCRFGAAC RFNHPPNRKL AIATSRMKGE FPERIGQPEC QYYLKTATCK 120 FGATCKFHHP RDKAGIAGRV TLNILGYPHR PNETECAYYL RTGQCKFGST CKFHHPQPSN 180 MMVSLRGSPV YPTVHSPTTP GQQSYPGGIT NWPLSRASFI PSPRWQGPSS YAPLILPQGV 240 MSVPGYTYSG HPSSVSSSES QQQTAGNNQI YGTSRQSEAA NSGSQGTLSP YRSGSVPVGY 300 YALQRENVFP ERPGQPDCQF YMKTGDCKFG AVCRFHHPRE RLLPAPDCIL SPIGLPLRPG 360 EPSCIFYSRY GICKFGPSCK FDHPMGVFTY NLAASSSPHA PVVRRLLGSS SGAGALALSS 420 EGLVDAGSAK PRRLSLSESR QMPSGDDNID TEG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-167 | C3H family protein |