PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028100486.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 280aa    MW: 32140.4 Da    PI: 4.5237
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028100486.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.21.1e-19653148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+++++ +G g W+++a++ g++Rt+k+c++rw++yl
   XP_028100486.1  6 KGPWTEEEDSKLINYITIYGEGPWNSVAQCAGLNRTGKSCRLRWLNYL 53
                     79********************************************97 PP
2Myb_DNA-binding431e-1359102146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+ l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
   XP_028100486.1  59 RGNLTLQEQFLILHLHLRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 102
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MEFIRKGPWT EEEDSKLINY ITIYGEGPWN SVAQCAGLNR TGKSCRLRWL NYLRPDVRRG  60
NLTLQEQFLI LHLHLRWGNR WSKIAQQLPG RTDNEIKNYW RTRIQKQAKQ LNCDVNSNEF  120
RDTIRNFLLP RLVDQIQAES DALSSMAEPT SIHDSSATET WMIASSSQQQ FLEKQSVFTD  180
FDSDHALANI WLNISSLTDW GGCFGATGLT SDRNNACCEQ DMFDDAEEEE EEETMEYRKA  240
SRLAGGGGGG WGSVDTMLYY DGGEEGYTNN TSFDYHYTFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.19e-75MYB family protein