PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028097632.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 21974.8 Da PI: 7.7313 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.7 | 4.5e-39 | 15 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf +eq ++ fa+vhk+FGasn +k+l ++p ++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l+ael XP_028097632.1 15 PCGACKFLRRKCVKGCVFAPYFDSEQgSAYFAAVHKVFGASNASKMLLRIPANKRLDAAITLCYEALARIRDPVYGCVGHIFTLQQQVVNLQAEL 109 7***********************998899***************************************************************** PP DUF260 95 allkee 100 a+++++ XP_028097632.1 110 AYIQAR 115 *99875 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence |
MSSNNGGGGG GGGGPCGACK FLRRKCVKGC VFAPYFDSEQ GSAYFAAVHK VFGASNASKM 60 LLRIPANKRL DAAITLCYEA LARIRDPVYG CVGHIFTLQQ QVVNLQAELA YIQARLSMLQ 120 FLPPPPPQPP GRPSTENLQS SSDFASNSNA STTNFDPSTS MELVSFCNPM DQEIEGGDDE 180 LQALAREFVS RYLPGGVKFR PSSSH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00210.1 | 3e-66 | LBD family protein |