PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028097117.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 476aa MW: 52653.1 Da PI: 5.4317

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028097117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.3	3.4e-17	147	196	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_028097117.1 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 196 78*****************......55**********************998 PP
2	AP2	41.2	4.1e-13	239	289	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_028097117.1 239 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 289 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MMLDLNLTAV ATDSISDGLE AVTEKFLELS GVHMDDSGTS NSSIINLDTS STNLGDEEFS 60 SSHLYSFDIL KTTECEEYNN GVPQTKQLFP VNGEGGEDAS SCQQRQWLDL SVVAGNSGGP 120 KEERGLVVPQ QRQQVRKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA 180 HAAARAYDRA AIKFRGTDAD INFNISDYNE DFQQMKNLTK EEFVHVLRRQ STGFSRGTSK 240 YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEVEAARAY DKAAIKCNGR EAVTNFEAST 300 YEEELSSEIE NGGSSHNLDL NLGISTPYFA NGQMGSNDLS SGLHLQSDLS NMHAENSVTT 360 MGIQPPHGQI MVSEHPPLWK GVNSHAVPIY EGRAIENSME FDSSPSWALQ FQGPFGGDVP 420 LPLFSTAASS GFATSTIATS SAAVYQPWFP TTTIPHNHYF PSVIDSNNIS QYYCRS

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MMLDLNLTAV ATDSISDGLE AVTEKFLELS GVHMDDSGTS NSSIINLDTS STNLGDEEFS  60
SSHLYSFDIL KTTECEEYNN GVPQTKQLFP VNGEGGEDAS SCQQRQWLDL SVVAGNSGGP  120
KEERGLVVPQ QRQQVRKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA  180
HAAARAYDRA AIKFRGTDAD INFNISDYNE DFQQMKNLTK EEFVHVLRRQ STGFSRGTSK  240
YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEVEAARAY DKAAIKCNGR EAVTNFEAST  300
YEEELSSEIE NGGSSHNLDL NLGISTPYFA NGQMGSNDLS SGLHLQSDLS NMHAENSVTT  360
MGIQPPHGQI MVSEHPPLWK GVNSHAVPIY EGRAIENSME FDSSPSWALQ FQGPFGGDVP  420
LPLFSTAASS GFATSTIATS SAAVYQPWFP TTTIPHNHYF PSVIDSNNIS QYYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-106	AP2 family protein