PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028096028.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 1119aa MW: 123303 Da PI: 6.5841

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028096028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.7	7.9e-22	137	238	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_028096028.1 137 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldftMQPPAQ--ELQSRDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 227 99***************************96555544..8********************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++++r+ XP_028096028.1 228 KQQLLLGIRRA 238 8889**997 PP
2	Auxin_resp	119.5	2.6e-39	263	346	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFvv+++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_028096028.1 263 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 346 79****************************998669******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1119 aa Download sequence
MKMPANGAGS CPPATASGNS SEGSGEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS 60 EQVAASMKKG VDSQIPNYPN LPSKLLCLLH NVTLHADLET DEVYAQMTLQ PVPSFDKDAL 120 LRSDLSMKAN KPQTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFTM QPPAQELQSR 180 DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR 240 QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVVPL AKYYKAVCSN 300 QISLGMRFRM MFETEESGTR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR 360 VSIWEIEPVT APFFICPTPP FFGSKRPRQL GMPDDESCGL ENLFKRTMPW LGDDMYMKDP 420 QSLPGLSLVQ WMNMQQNPSL GNSLQPNYLH SLSGSVLQNL AGADLTRQLG GLPSPQIPQQ 480 NNLQFNTQKP TQQTQLDQLQ KLPAAATLNP LGSIIQQQQQ QQQQFVDITQ PPNQNLPSTQ 540 VQAQLLQSQA LGQTQNILQQ QPSIQNHQLH RNLSQNLQLQ QQIIGQNQQQ NLMPSQLPDQ 600 VNQQLQMSEN QIQFQLLQNL HQQQQAILAQ QQSTLQQPPQ LPQVQDQQRQ LLDASQSFSR 660 AATPSQMVDM PQATAIATSL PPQSHLIPQQ MSKTNNSQPN IRFSHPPQQQ PKLQQHQQPG 720 VLPELPGHLG HTPTSNQLST TGSSLLTGAA GGGQSGLTDD VPSCSTSPST NNCPGLVQPI 780 MNGRAQRSMA IGEEMTQSSA TLLSSSGLET MSANANLVKD LQLKPDFKPS LNISKSQNQG 840 FLAPQTYLNA AGTQMDYLDT SSSATSVCLS QNDVHLQQNI PLSFNQQSLL FRDTSQDGEV 900 QGDPRSSVRF GANTDSQLGM PMIPDPLLTK GMVGSEKDFS NNLSSGGGLL STYENPKDTQ 960 PELSSSMVSQ SFGVPDMTFN SLDSTINDSS FLSRGAWAPP SQFQRMRTYT KVYKRGAVGR 1020 SIDITRYSGY DELKQDLARR FGIEGQLEDR HRIGWKLVYV DHENDVLLVG DDPWEEFVNC 1080 VRCIKILSPQ EVQAMSLDGD FGNNVLPNQA CSSSDGGNV

Sequence ? help Back to Top

Protein Sequence Length: 1119 aa Download sequence

MKMPANGAGS CPPATASGNS SEGSGEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS  60
EQVAASMKKG VDSQIPNYPN LPSKLLCLLH NVTLHADLET DEVYAQMTLQ PVPSFDKDAL  120
LRSDLSMKAN KPQTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFTM QPPAQELQSR  180
DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR  240
QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVVPL AKYYKAVCSN  300
QISLGMRFRM MFETEESGTR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR  360
VSIWEIEPVT APFFICPTPP FFGSKRPRQL GMPDDESCGL ENLFKRTMPW LGDDMYMKDP  420
QSLPGLSLVQ WMNMQQNPSL GNSLQPNYLH SLSGSVLQNL AGADLTRQLG GLPSPQIPQQ  480
NNLQFNTQKP TQQTQLDQLQ KLPAAATLNP LGSIIQQQQQ QQQQFVDITQ PPNQNLPSTQ  540
VQAQLLQSQA LGQTQNILQQ QPSIQNHQLH RNLSQNLQLQ QQIIGQNQQQ NLMPSQLPDQ  600
VNQQLQMSEN QIQFQLLQNL HQQQQAILAQ QQSTLQQPPQ LPQVQDQQRQ LLDASQSFSR  660
AATPSQMVDM PQATAIATSL PPQSHLIPQQ MSKTNNSQPN IRFSHPPQQQ PKLQQHQQPG  720
VLPELPGHLG HTPTSNQLST TGSSLLTGAA GGGQSGLTDD VPSCSTSPST NNCPGLVQPI  780
MNGRAQRSMA IGEEMTQSSA TLLSSSGLET MSANANLVKD LQLKPDFKPS LNISKSQNQG  840
FLAPQTYLNA AGTQMDYLDT SSSATSVCLS QNDVHLQQNI PLSFNQQSLL FRDTSQDGEV  900
QGDPRSSVRF GANTDSQLGM PMIPDPLLTK GMVGSEKDFS NNLSSGGGLL STYENPKDTQ  960
PELSSSMVSQ SFGVPDMTFN SLDSTINDSS FLSRGAWAPP SQFQRMRTYT KVYKRGAVGR  1020
SIDITRYSGY DELKQDLARR FGIEGQLEDR HRIGWKLVYV DHENDVLLVG DDPWEEFVNC  1080
VRCIKILSPQ EVQAMSLDGD FGNNVLPNQA CSSSDGGNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein