PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028096027.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 1120aa MW: 123436 Da PI: 6.6588

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028096027.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.7	7.9e-22	135	236	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ XP_028096027.1 135 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldftMQPPAQ--ELQSRDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 225 99***************************96555544..8********************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++++r+ XP_028096027.1 226 KQQLLLGIRRA 236 8889**997 PP
2	Auxin_resp	119.5	2.6e-39	261	344	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFvv+++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_028096027.1 261 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 344 79****************************998669******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1120 aa Download sequence
MKMPANGAGS CPPATASGNS SEGEKKSINP ELWQACAGPL VNLPAAGTHV VYFPQGHSEQ 60 VAASMKKGVD SQIPNYPNLP SKLLCLLHNV TLHADLETDE VYAQMTLQPV PSFDKDALLR 120 SDLSMKANKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPALDFTMQP PAQELQSRDL 180 HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP 240 TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVVPLAK YYKAVCSNQI 300 SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS 360 IWEIEPVTAP FFICPTPPFF GSKRPRQLGM PGNGYDESCG LENLFKRTMP WLGDDMYMKD 420 PQSLPGLSLV QWMNMQQNPS LGNSLQPNYL HSLSGSVLQN LAGADLTRQL GGLPSPQIPQ 480 QNNLQFNTQK PTQQTQLDQL QKLPAAATLN PLGSIIQQQQ QQQQQFVDIT QPPNQNLPST 540 QVQAQLLQSQ ALGQTQNILQ QQPSIQNHQL HRNLSQNLQL QQQIIGQNQQ QNLMPSQLPD 600 QVNQQLQMSE NQIQFQLLQN LHQQQQAILA QQQSTLQQPP QLPQVQDQQR QLLDASQSFS 660 RAATPSQMVD MPQATAIATS LPPQSHLIPQ QMSKTNNSQP NIRFSHPPQQ QPKLQQHQQP 720 GVLPELPGHL GHTPTSNQLS TTGSSLLTGA AGGGQSGLTD DVPSCSTSPS TNNCPGLVQP 780 IMNGRAQRSM AIGEEMTQSS ATLLSSSGLE TMSANANLVK DLQLKPDFKP SLNISKSQNQ 840 GFLAPQTYLN AAGTQMDYLD TSSSATSVCL SQNDVHLQQN IPLSFNQQSL LFRDTSQDGE 900 VQGDPRSSVR FGANTDSQLG MPMIPDPLLT KGMVGSEKDF SNNLSSGGGL LSTYENPKDT 960 QPELSSSMVS QSFGVPDMTF NSLDSTINDS SFLSRGAWAP PSQFQRMRTY TKVYKRGAVG 1020 RSIDITRYSG YDELKQDLAR RFGIEGQLED RHRIGWKLVY VDHENDVLLV GDDPWEEFVN 1080 CVRCIKILSP QEVQAMSLDG DFGNNVLPNQ ACSSSDGGNV

Sequence ? help Back to Top

Protein Sequence Length: 1120 aa Download sequence

MKMPANGAGS CPPATASGNS SEGEKKSINP ELWQACAGPL VNLPAAGTHV VYFPQGHSEQ  60
VAASMKKGVD SQIPNYPNLP SKLLCLLHNV TLHADLETDE VYAQMTLQPV PSFDKDALLR  120
SDLSMKANKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPALDFTMQP PAQELQSRDL  180
HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP  240
TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVVPLAK YYKAVCSNQI  300
SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS  360
IWEIEPVTAP FFICPTPPFF GSKRPRQLGM PGNGYDESCG LENLFKRTMP WLGDDMYMKD  420
PQSLPGLSLV QWMNMQQNPS LGNSLQPNYL HSLSGSVLQN LAGADLTRQL GGLPSPQIPQ  480
QNNLQFNTQK PTQQTQLDQL QKLPAAATLN PLGSIIQQQQ QQQQQFVDIT QPPNQNLPST  540
QVQAQLLQSQ ALGQTQNILQ QQPSIQNHQL HRNLSQNLQL QQQIIGQNQQ QNLMPSQLPD  600
QVNQQLQMSE NQIQFQLLQN LHQQQQAILA QQQSTLQQPP QLPQVQDQQR QLLDASQSFS  660
RAATPSQMVD MPQATAIATS LPPQSHLIPQ QMSKTNNSQP NIRFSHPPQQ QPKLQQHQQP  720
GVLPELPGHL GHTPTSNQLS TTGSSLLTGA AGGGQSGLTD DVPSCSTSPS TNNCPGLVQP  780
IMNGRAQRSM AIGEEMTQSS ATLLSSSGLE TMSANANLVK DLQLKPDFKP SLNISKSQNQ  840
GFLAPQTYLN AAGTQMDYLD TSSSATSVCL SQNDVHLQQN IPLSFNQQSL LFRDTSQDGE  900
VQGDPRSSVR FGANTDSQLG MPMIPDPLLT KGMVGSEKDF SNNLSSGGGL LSTYENPKDT  960
QPELSSSMVS QSFGVPDMTF NSLDSTINDS SFLSRGAWAP PSQFQRMRTY TKVYKRGAVG  1020
RSIDITRYSG YDELKQDLAR RFGIEGQLED RHRIGWKLVY VDHENDVLLV GDDPWEEFVN  1080
CVRCIKILSP QEVQAMSLDG DFGNNVLPNQ ACSSSDGGNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein