PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028094872.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB_related

Protein Properties

Length: 492aa MW: 54417.5 Da PI: 6.9362

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028094872.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.2e-17	64	108	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ XP_028094872.1 64 RERWTEEEHKKFIEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 108 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MVSAARAIQD QNGVTQNEEQ FQSDQISMDV DPICVKGAQL KEQFPSGNDY SPKVRKPYTI 60 TKQRERWTEE EHKKFIEALK LYGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVVRESNTTD 120 AISVKPIEIP PPRPKRKPVH PYPRKLVAPL TTGTADEQLR RSTSPNLSVS EHENQSPTSV 180 FSAIGSEILG TTGSNTPNDS PSPVSSAAVA NNGSFLLSEP NSSPEESGSP LVVQFPSISA 240 PDVQVPVKLE LFPQDGVFAK EGPAEAPSTQ SLKLFGKTVL VTDSHRPSSP TTGTCKSSLS 300 DTLPWNSTPT EFSSQNTEGT WNPQTSGAPT ALYYMQFPNQ NPNPAEFGSG HSLPLWAFYG 360 GIQFPCFPLH NPVPTKANPS SFSGQTQERE VQKEGSWTGS NTGSVNAGGD GDRNWEVETQ 420 SRQLSFVKEE NENQPKFLCK PNEKAFFSEQ RASPDKCPKG FVPYKRCLAE RDYQLSSITR 480 EEREEQRIRL CL

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MVSAARAIQD QNGVTQNEEQ FQSDQISMDV DPICVKGAQL KEQFPSGNDY SPKVRKPYTI  60
TKQRERWTEE EHKKFIEALK LYGRAWRRIE EHVGTKTAVQ IRSHAQKFFS KVVRESNTTD  120
AISVKPIEIP PPRPKRKPVH PYPRKLVAPL TTGTADEQLR RSTSPNLSVS EHENQSPTSV  180
FSAIGSEILG TTGSNTPNDS PSPVSSAAVA NNGSFLLSEP NSSPEESGSP LVVQFPSISA  240
PDVQVPVKLE LFPQDGVFAK EGPAEAPSTQ SLKLFGKTVL VTDSHRPSSP TTGTCKSSLS  300
DTLPWNSTPT EFSSQNTEGT WNPQTSGAPT ALYYMQFPNQ NPNPAEFGSG HSLPLWAFYG  360
GIQFPCFPLH NPVPTKANPS SFSGQTQERE VQKEGSWTGS NTGSVNAGGD GDRNWEVETQ  420
SRQLSFVKEE NENQPKFLCK PNEKAFFSEQ RASPDKCPKG FVPYKRCLAE RDYQLSSITR  480
EEREEQRIRL CL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-66	MYB_related family protein