PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028093479.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 517aa MW: 57505.4 Da PI: 6.6896

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028093479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.00019	80	97	2	19
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk Fs++ ++ H XP_028093479.1 80 VCENCGKEFSSWKSFLEH 97 6**************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MALMVDQQTN FKHFCRICKK GFMCGRALGG HMRAHGIGDE IGNIDDDDPA SDWEDRGNVP 60 AKQRMYALRT NPNRLKSCRV CENCGKEFSS WKSFLEHGKC SSDDAESLVS SPPRSDCGGE 120 ERRGCQQWSK RKRSFRAKVG SFNSMCPSSE DDDIAATCLV MLSNARVDPL AADQPEESCA 180 SASKEEERRN PVAFIPPLST RTPPEKAKGV AKGMFECKAC KKVFNSHQAL GGHRASHKKV 240 KGCFAARLDH IVDDGLADDD VITQEEFLLP SKSTSSFLLE HSPISPVGGA SKRKSKVHEC 300 SICHRIFSSG QALGGHKRCH WITSNSPETS SLAKFHQFHD HHQIDHNHIH QKPKFSKSDT 360 LDLNLPATTI AGDDLTGIRR DPRNPLSFEV STEIHLQSWI DVDAEGKKYT DHCHHQHHQH 420 NDDHNNDHCD DHNNDHDNDN ENDNKNNSNN NNDNEYNKNN NNNNNNNIEM QNVDDEAESK 480 VKLAKLSELK DMNISGSSSP WLQVGIGSTT GVGAADL

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MALMVDQQTN FKHFCRICKK GFMCGRALGG HMRAHGIGDE IGNIDDDDPA SDWEDRGNVP  60
AKQRMYALRT NPNRLKSCRV CENCGKEFSS WKSFLEHGKC SSDDAESLVS SPPRSDCGGE  120
ERRGCQQWSK RKRSFRAKVG SFNSMCPSSE DDDIAATCLV MLSNARVDPL AADQPEESCA  180
SASKEEERRN PVAFIPPLST RTPPEKAKGV AKGMFECKAC KKVFNSHQAL GGHRASHKKV  240
KGCFAARLDH IVDDGLADDD VITQEEFLLP SKSTSSFLLE HSPISPVGGA SKRKSKVHEC  300
SICHRIFSSG QALGGHKRCH WITSNSPETS SLAKFHQFHD HHQIDHNHIH QKPKFSKSDT  360
LDLNLPATTI AGDDLTGIRR DPRNPLSFEV STEIHLQSWI DVDAEGKKYT DHCHHQHHQH  420
NDDHNNDHCD DHNNDHDNDN ENDNKNNSNN NNDNEYNKNN NNNNNNNIEM QNVDDEAESK  480
VKLAKLSELK DMNISGSSSP WLQVGIGSTT GVGAADL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	2e-30	C2H2 family protein