PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028093432.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

RAV

Protein Properties

Length: 344aa MW: 39677.9 Da PI: 6.65

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028093432.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.3	4.3e-09	38	85	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV + +g W A+I+ + +r++lg+f ++ +Aa a++ a kl+ XP_028093432.1 38 SKFKGVVPQP-NGHWGAQIYA------NhQRVWLGTFKSEIDAAMAYDSASIKLR 85 79**9778.8**999......44******99*******99998 PP
2	B3	81.4	8.8e-26	159	256	1	86
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ltpsdv+k++rlv+pkk+a ++ +g k ++ l ++d+s W+++++y+k+s+++v+tkGW++Fvk+++Lk++D++ F+ XP_028093432.1 159 FQKELTPSDVSKLNRLVVPKKYAVKYfppiventeentDGGKVDEVHLFFYDRSMSLWKFRYCYWKSSQSFVFTKGWNRFVKEKELKANDIIAFY 253 99***************************999999955556889**********************************************9 PP E-S CS B3 84 ldg 86 + XP_028093432.1 254 ICE 256 553 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MEEEMFSTIE DVKMNVIVEI SDRISPSHPK NDNIDFPSKF KGVVPQPNGH WGAQIYANHQ 60 RVWLGTFKSE IDAAMAYDSA SIKLRTGDNH RNFSWTNITV HEPKFQSFHS TEAILNMIRD 120 GSYPSKFSDF MRSQTGEHEI GHNLMRMHDH AGFSCKLLFQ KELTPSDVSK LNRLVVPKKY 180 AVKYFPPIVE NTEENTDGGK VDEVHLFFYD RSMSLWKFRY CYWKSSQSFV FTKGWNRFVK 240 EKELKANDII AFYICEGQEK AKEAQAFYVI DIGYNGGART DRVVEGIGQN VDMQVDLCHG 300 LGQYFDCRLF REEKEEFGDQ KVITGLVEAP NVKKSVRLFG VDIN

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MEEEMFSTIE DVKMNVIVEI SDRISPSHPK NDNIDFPSKF KGVVPQPNGH WGAQIYANHQ  60
RVWLGTFKSE IDAAMAYDSA SIKLRTGDNH RNFSWTNITV HEPKFQSFHS TEAILNMIRD  120
GSYPSKFSDF MRSQTGEHEI GHNLMRMHDH AGFSCKLLFQ KELTPSDVSK LNRLVVPKKY  180
AVKYFPPIVE NTEENTDGGK VDEVHLFFYD RSMSLWKFRY CYWKSSQSFV FTKGWNRFVK  240
EKELKANDII AFYICEGQEK AKEAQAFYVI DIGYNGGART DRVVEGIGQN VDMQVDLCHG  300
LGQYFDCRLF REEKEEFGDQ KVITGLVEAP NVKKSVRLFG VDIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	7e-98	RAV family protein