PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028092842.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 340aa MW: 38302.1 Da PI: 5.5142

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028092842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126	1.8e-39	57	157	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC+ +C+lapyfp +qpk f+n+h+lFG+sn+lk+lk+l++ ++ +am+s++y+A++r r Pv+G++gvi +lq q++ +++e + XP_028092842.1 57 ACAACKYQRRKCSGECPLAPYFPPDQPKMFQNAHRLFGVSNILKILKQLDPAQKIEAMRSIIYQANIRDRFPVHGCCGVIGQLQYQIRLAEEEFH 151 7********************************************************************************************** PP DUF260 96 llkeel 101 +++++l XP_028092842.1 152 AVQAQL 157 999885 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MALTTILSSL SSPLSLYPHF SLIIFITVIF LSFSIFPFLN TQLGSFRMTL KGGTSQACAA 60 CKYQRRKCSG ECPLAPYFPP DQPKMFQNAH RLFGVSNILK ILKQLDPAQK IEAMRSIIYQ 120 ANIRDRFPVH GCCGVIGQLQ YQIRLAEEEF HAVQAQLALY RQNEIQQHEI SCNPNDCSSQ 180 LQLGMGLPPS NNALSLFHQD APQPVAMPIS SYQSYPNCNN VIYNSGFVDK EHVVNSFWVQ 240 HQYSNDNNNN NNNNNSMAMA MQSQLMSSQE LTIQQELAQE YDEMHPFFDT IDDRQSYIDS 300 KEAYDSSSDS SLKDTTQSIE HVTDNELKSA AACFSLTSVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-56	LBD family protein