PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028092500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 24418.2 Da PI: 8.5816 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00043 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F + L H +H XP_028092500.1 87 YKCSVCDKAFASYQALGGHKASH 109 9***********99998888877 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence |
MALEALNSPS AATPTFHHEN ESLRYLEPWN KGKRSKRPRM ENPPTEEEYL ALCLIMLARG 60 GPTSSASQRR HSTPPPSSSS SESKLVYKCS VCDKAFASYQ ALGGHKASHR KLAGSDDQST 120 STSTGTTTVT SGGRTHECSI CHKCFPTGQA LGGHKRCHYD GGSSGVTSSE GVGSTNSHRG 180 FDLNLPAALP QFCPRFAGEE EVESPHPAKK PRFLLSAKSQ VSLSISLD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G27730.1 | 2e-50 | C2H2 family protein |