PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028092317.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 303aa    MW: 35002.7 Da    PI: 8.8087
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028092317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.52.6e-161555343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+  r+v f kR++g+ KK +EL +LCd+ev++ii++++
  XP_028092317.1 15 IRNDKTRYVIFQKRKKGLKKKTYELKTLCDVEVCLIIYGPK 55
                    89*************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MNLQMGKAKQ NMELIRNDKT RYVIFQKRKK GLKKKTYELK TLCDVEVCLI IYGPKINGRP  60
TDDQAEIWPS NPDVIQHLID TYKNQSSEDR TRRTLGLSNF FEDRNQKIED MLVKLRKKNN  120
EARYSTWDDR YNGLSKEQLR EFESVLEGKL QDVKAKVAFM KGIDHKLSVA CNDDNSHTQT  180
TQNQSYFMHG GMFGTKVDND IANLQYSFNQ AQVDANSKAN PMMMMPMNNN QYYNQLGGVS  240
SCNFMYNPLD RPIYYDPMML ENLIVNNPAL LVGYCNPSIQ TTSPSSSVHA SQLDKYYKPG  300
DFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-13M-type_MADS family protein