PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028092078.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 698aa    MW: 79424.2 Da    PI: 6.515
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028092078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.98.3e-1143236932374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL++cA+a++s+d + a++lL+r+++ as +gd ++Rla yf++AL+arla+ ++ ly a+ ++  s    ++ l+ ++++ +++P+ k+s+ 
  XP_028092078.1 323 MSLLTQCAQAIASSDSRTANELLNRIRQYASAYGDGTERLAYYFAKALEARLAGAGTMLYTAFVSTGIS---AADILKGYQVYIKACPFKKLSNS 414
                     689************************************************************999998...99********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN+ I++  ++++r+HiiDf+i +G+QWp+L+q L+ R++gpp+l iTg++ p++g   +e++eetg+rLak +++++vpfefn+ +ak+++++
  XP_028092078.1 415 YANRSIMKLSKKATRLHIIDFGILYGFQWPCLIQRLSMREGGPPKLHITGIELPQPGfrPAERVEETGRRLAKDCKRFNVPFEFNA-IAKKWDTI 508
                     ********************************************************9*****************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +le+++++ +E+l+Vn+ ++l++++d++v+++s+rd vL+l+k+++P+++v+   +   n++ F++rf eal ++salfd+++a++pre++ r+ 
  XP_028092078.1 509 QLEDIKIEADEVLVVNCLYRLKNVPDDTVAVSSPRDMVLNLIKRINPDLFVHGVLNGMFNAPFFATRFREALFHFSALFDMYDANVPREDHYRML 603
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      E+e  gr+++nv+aceg+er+er et+++W+ r  +aGF+++pl+++++ ++++ +r+ +++ + v+e+s+++++gWk+r ++++S+W+
  XP_028092078.1 604 FEKETYGRDVMNVIACEGTERVERPETYKQWQVRNIRAGFRQLPLDKEIVGEVRRKVRQGYNKDFVVDEDSNWMLQGWKGRIIYAISCWK 693
                     *************************************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    
METLIRGYKH SGSMNGFKFN HNTISSFSQR NFVNHEFGII PNVPNPSNIA QSSDPDSPED  60
ENTILKYISQ MLMEEEDLEH KPCMFQDCMA LQAAEKSFYD VLGEKYPPSS IENQHPLSLL  120
NQNPDSPIDN FTGNCSSQSC NSSVTVDNFI ESAWFRDRDK FERSFTQSSH GDYNFDSVLQ  180
SFDSSNSFFN QFFQYKDHGN NDENSRVVVD TEKNGRGNSP NGSRGKKNHD REESDCVESG  240
RSNKQLAASS MDESDEEPEM YDKVLLCPGL NPHLHEDSAS CVDDNYVDHN VVARGKLPRG  300
SNGGGRPRGK RQGGSKKEVV DLMSLLTQCA QAIASSDSRT ANELLNRIRQ YASAYGDGTE  360
RLAYYFAKAL EARLAGAGTM LYTAFVSTGI SAADILKGYQ VYIKACPFKK LSNSYANRSI  420
MKLSKKATRL HIIDFGILYG FQWPCLIQRL SMREGGPPKL HITGIELPQP GFRPAERVEE  480
TGRRLAKDCK RFNVPFEFNA IAKKWDTIQL EDIKIEADEV LVVNCLYRLK NVPDDTVAVS  540
SPRDMVLNLI KRINPDLFVH GVLNGMFNAP FFATRFREAL FHFSALFDMY DANVPREDHY  600
RMLFEKETYG RDVMNVIACE GTERVERPET YKQWQVRNIR AGFRQLPLDK EIVGEVRRKV  660
RQGYNKDFVV DEDSNWMLQG WKGRIIYAIS CWKPVKEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein