PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028091360.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 501aa MW: 55058.9 Da PI: 8.7716

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028091360.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	90	109	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk F ++ L H++ XP_028091360.1 90 VCKECGKGFQSWKALFGHMK 109 6******************7 PP
2	zf-C2H2	10.8	0.0015	418	440	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C k+Fs+ L H r+H XP_028091360.1 418 HECPFCFKVFSSGQALGGHKRSH 440 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MEEDQELKHV CKLCNKSFPC GRSLGGHMRS HVINSAETDK KLNKSKLSSV NNGGGAIGTP 60 VSYGLRDNPK KTGRFADSNE KTNLLLHDKV CKECGKGFQS WKALFGHMKC HSERISSTVE 120 EDSWTSAANN ESTVAAPNRK KRSRRVTRYI ATETSSLSIA NNNNNGSSCV CENVQEQEEV 180 AMCLIMLSRD VGNKGSGLNY VAESSDEVGS SIRSNGIAKN SWSDGSEAVK FKKLRNGKLE 240 PAILGSENSH FVTKQSEFGP SGVSRNGSKS KLKISDVCVD GSGNDKTKKP KVEDGTELGE 300 NVMKKLNSKK SKKQWLNLLN PELGDVWETE KDKALENKSK FECTTCNKTF HSYQALGGHR 360 ASHKKIKGCF ASKIDSGENS IEETEISPDP TVDAKLIKVL KNEDPIETSP VTKKNKGHEC 420 PFCFKVFSSG QALGGHKRSH LVGSNQSTVI QKPVPEIRDV LDLNLPAPVE EESSTEQVGF 480 KPWWFEIARN HKHEPLFGLI S

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MEEDQELKHV CKLCNKSFPC GRSLGGHMRS HVINSAETDK KLNKSKLSSV NNGGGAIGTP  60
VSYGLRDNPK KTGRFADSNE KTNLLLHDKV CKECGKGFQS WKALFGHMKC HSERISSTVE  120
EDSWTSAANN ESTVAAPNRK KRSRRVTRYI ATETSSLSIA NNNNNGSSCV CENVQEQEEV  180
AMCLIMLSRD VGNKGSGLNY VAESSDEVGS SIRSNGIAKN SWSDGSEAVK FKKLRNGKLE  240
PAILGSENSH FVTKQSEFGP SGVSRNGSKS KLKISDVCVD GSGNDKTKKP KVEDGTELGE  300
NVMKKLNSKK SKKQWLNLLN PELGDVWETE KDKALENKSK FECTTCNKTF HSYQALGGHR  360
ASHKKIKGCF ASKIDSGENS IEETEISPDP TVDAKLIKVL KNEDPIETSP VTKKNKGHEC  420
PFCFKVFSSG QALGGHKRSH LVGSNQSTVI QKPVPEIRDV LDLNLPAPVE EESSTEQVGF  480
KPWWFEIARN HKHEPLFGLI S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	3e-57	C2H2 family protein