PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028091086.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARF

Protein Properties

Length: 588aa MW: 64454.6 Da PI: 6.1993

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028091086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.8	5.8e-25	113	215	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+ltpsd+++ g +++p+ +a+++ ++ + tl+++d +g +We+++iyr++++r++lt+GW++Fv+ ++L +gD+vvF++++ + XP_028091086.1 113 FAKILTPSDANNGGGFSVPRFCADSIfpplnfaADPPVQ--TLSITDVHGVVWEFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFMRNR-R 204 89*******************999*96555555..8********************************************766.6 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++e++++v+r+ XP_028091086.1 205 SGEFFIGVRRA 215 6777**996 PP
2	Auxin_resp	88.5	1.2e-29	263	346	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a++++ FevvY+Pr+++++Fvvk+e ve++l+v +++G R+km +etedss+ ++ +Gtv++ + d+ W++S+Wr+L+ XP_028091086.1 263 AAELAAQGMGFEVVYYPRVGWADFVVKAETVEESLSVFWTAGVRVKMGMETEDSSRMTWfQGTVSSATVPDNGPWRGSPWRMLQ 346 688999****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence
MANTTELRQV EPTVWKACAG TSVQIPTVDS RVYYFPQGHA EQASSPPFLS PLVSSQPLIL 60 CRVAAVLFLA NSDTDEVFAK IRLLPLLRSP NPDCSSRGGD VDVDVDEDAV VSFAKILTPS 120 DANNGGGFSV PRFCADSIFP PLNFAADPPV QTLSITDVHG VVWEFRHIYR GTPRRHLLTT 180 GWSKFVNHKK LIAGDSVVFM RNRRSGEFFI GVRRAVRSNA DCGGRWNSPV GSVRVKTEED 240 GNRKEGFSRN GKGRVSAESV SEAAELAAQG MGFEVVYYPR VGWADFVVKA ETVEESLSVF 300 WTAGVRVKMG METEDSSRMT WFQGTVSSAT VPDNGPWRGS PWRMLQVTWD EPEVLQNVKR 360 VNPWQVEYVV PTPPIHSTYP PAKKLRFSQN SVLPTDGEGD LFFPITGLNN SMIRNLNPSL 420 MNYNSFPAGM QGARQDPFCV SSLSNFTSEN NHHMCGDKLV GNNMTPKLKT VSTELNIGSS 480 QTDNLSPDSQ SSVHFFGNDL VGKQGCNSST KVSLGSFQLF GKIIHTKDPV ENGFDDAGCT 540 EDKGCKMFKE ADGMKNSLDL SLTCPYTNLL DGLDVQCQRA SAVEACSL

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence

MANTTELRQV EPTVWKACAG TSVQIPTVDS RVYYFPQGHA EQASSPPFLS PLVSSQPLIL  60
CRVAAVLFLA NSDTDEVFAK IRLLPLLRSP NPDCSSRGGD VDVDVDEDAV VSFAKILTPS  120
DANNGGGFSV PRFCADSIFP PLNFAADPPV QTLSITDVHG VVWEFRHIYR GTPRRHLLTT  180
GWSKFVNHKK LIAGDSVVFM RNRRSGEFFI GVRRAVRSNA DCGGRWNSPV GSVRVKTEED  240
GNRKEGFSRN GKGRVSAESV SEAAELAAQG MGFEVVYYPR VGWADFVVKA ETVEESLSVF  300
WTAGVRVKMG METEDSSRMT WFQGTVSSAT VPDNGPWRGS PWRMLQVTWD EPEVLQNVKR  360
VNPWQVEYVV PTPPIHSTYP PAKKLRFSQN SVLPTDGEGD LFFPITGLNN SMIRNLNPSL  420
MNYNSFPAGM QGARQDPFCV SSLSNFTSEN NHHMCGDKLV GNNMTPKLKT VSTELNIGSS  480
QTDNLSPDSQ SSVHFFGNDL VGKQGCNSST KVSLGSFQLF GKIIHTKDPV ENGFDDAGCT  540
EDKGCKMFKE ADGMKNSLDL SLTCPYTNLL DGLDVQCQRA SAVEACSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-177	ARF family protein