PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028090704.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 349aa    MW: 40296.7 Da    PI: 8.6868
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028090704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF529.3e-175898343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+  r+vtf kR++g+ KK +EL +LCd+ev+ ii++++
  XP_028090704.1 58 IRNDKTRYVTFQKRKKGLKKKTYELKTLCDVEVCWIIYGPK 98
                    89*************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MRAMQQDAVC QDELAKQQAE IMTQQAELIT RLQQQNTASA SQQIPPPMGR AKQNMELIRN  60
DKTRYVTFQK RKKGLKKKTY ELKTLCDVEV CWIIYGPKIN DRPTDDQAEI WPPNPDVIQH  120
LIDTYKNLSS EDRTRRTLGL SNFFEERNQK IEDTLVKLRK KNDEARYSTW DDRYNGLSKE  180
QLREFESVLE GKLQDVKARV AFMKGIDQKL SVACIDDNSH TQTIQNQSYF MHGGMFGTKV  240
DNDIANLQYY FNQAQVYANS KANPMMMTTM MPRNNNQYYN KLGGVSSSNF MCNPLDRPIY  300
YDPMMLENAI VNNPLPPVGY CNPSIQTTSP SSSVHASQLD KYYKPGIFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-11M-type_MADS family protein