PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028089702.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

NF-YC

Protein Properties

Length: 275aa MW: 30022.1 Da PI: 5.0137

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028089702.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.1	6.8e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v + ++fdfl +iv + XP_028089702.1 1 MQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLQRGAKTMSALHLKHCVRSYNVFDFLREIVSK 69 899**************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MQADEDVGKI AMAVPVLVSK ALELFLQDLC DRTYDITLQR GAKTMSALHL KHCVRSYNVF 60 DFLREIVSKV PDYGHPDAAA EDRTMSKRRK AVGEEFNDSD EESKRSRMHD IISHASSGGR 120 GRGRGRGRGR GRGARVSHRE HDVDIDCCTP AQHSSKQTLI PGKPTTDHDG LESKEIPKEN 180 SEVSNGVNPA GRNFDLNTEL NDNTDKASSG AATAAAAPPP PPPAACASST GPTEVRSEEY 240 PGWSISEMDG MTIDPLRFAQ LNSRLDEDED YDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	129	RGRGRGRGRG
2	120	130	RGRGRGRGRGR
3	122	131	RGRGRGRGRG
4	122	132	RGRGRGRGRGR
5	124	133	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-58	NF-YC family protein