PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028089701.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

NF-YC

Protein Properties

Length: 292aa MW: 32048.6 Da PI: 6.0617

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028089701.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.1	2e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v + ++fdfl +iv + XP_028089701.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLQRGAKTMSALHLKHCVRSYNVFDFLREIVSK 86 5789*************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MKKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLQRGAK 60 TMSALHLKHC VRSYNVFDFL REIVSKVPDY GHPDAAAEDR TMSKRRKAVG EEFNDSDEES 120 KRSRMHDIIS HASSGGRGRG RGRGRGRGRG ARVSHREHDV DIDCCTPAQH SSKQTLIPGK 180 PTTDHDGLES KEIPKENSEV SNGVNPAGRN FDLNTELNDN TDKASSGAAT AAAAPPPPPP 240 AACASSTGPT EVRSEEYPGW SISEMDGMTI DPLRFAQLNS RLDEDEDYDE EG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	146	RGRGRGRGRG
2	137	147	RGRGRGRGRGR
3	139	148	RGRGRGRGRG
4	139	149	RGRGRGRGRGR
5	141	150	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-70	NF-YC family protein