PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028089651.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 423aa MW: 47238.8 Da PI: 5.3718

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028089651.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.5	1.1e-13	182	233	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P++ + ++ + a+i A++++k+L+ XP_028089651.1 182 QRMTHIAVERNRRRQMNDHLTSLRSLMPSS---YIQRGDQASIIGGAIDFLKELE 233 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MQLFGEEHVD VETTNKTLGF SCFGQFVSAD HHSLSFQEEE EEETQLRLRR SGSLEDKMPF 60 LEMLQSVESP SYSPLCELSL QALLNLQQQQ QSKNNPWDQS HSFQAPEQPE SCLTSYHDVL 120 VKSETNNQQQ QVKPPVEEME MEMEMAETRT GRDERGLKTV VKREKRKRMK PAAKNKEEAE 180 SQRMTHIAVE RNRRRQMNDH LTSLRSLMPS SYIQRGDQAS IIGGAIDFLK ELEQLLQSLQ 240 AQKRMKKSEL SSDQGRGGEE GGGGDTASSS TSSSSTTATE NCTEVGITTT ARSKGRSNEF 300 TAEKKSAAAD VRVTVIQKHV NLKVECPRIP GQLLKAIVAL EGLKLTVLHL NITSFETSIH 360 YSFNLKISIS STNSFCFLGG TTVNHFDLEE RKAAIEDDCE VGSADGIAVA VHQIFSFVNN 420 DDI

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MQLFGEEHVD VETTNKTLGF SCFGQFVSAD HHSLSFQEEE EEETQLRLRR SGSLEDKMPF  60
LEMLQSVESP SYSPLCELSL QALLNLQQQQ QSKNNPWDQS HSFQAPEQPE SCLTSYHDVL  120
VKSETNNQQQ QVKPPVEEME MEMEMAETRT GRDERGLKTV VKREKRKRMK PAAKNKEEAE  180
SQRMTHIAVE RNRRRQMNDH LTSLRSLMPS SYIQRGDQAS IIGGAIDFLK ELEQLLQSLQ  240
AQKRMKKSEL SSDQGRGGEE GGGGDTASSS TSSSSTTATE NCTEVGITTT ARSKGRSNEF  300
TAEKKSAAAD VRVTVIQKHV NLKVECPRIP GQLLKAIVAL EGLKLTVLHL NITSFETSIH  360
YSFNLKISIS STNSFCFLGG TTVNHFDLEE RKAAIEDDCE VGSADGIAVA VHQIFSFVNN  420
DDI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	194	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	3e-49	bHLH family protein