PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028087833.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB_related
Protein Properties Length: 235aa    MW: 26740.1 Da    PI: 8.4856
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028087833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-171055148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ +++Ed+l+++ +++lG++ W++Ia +++ gRt++++k++w+++l
   XP_028087833.1 10 RGNISPDEDDLIIKMHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55
                     7899******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MNYLRPDIKR GNISPDEDDL IIKMHALLGN RWSLIAGRLP GRTDNEIKNY WNTHLSKRLL  60
SQGTDPNTHK KISDPHLKET KKRRSNNKKQ KNKTKSNVVV IEKLKVHNPK PTRIKSLSSF  120
SMSRNGSFGW TISGGSSSSH EGDHRGSLLV GTEVVHVPWS DFKDDVNHEN RVGFLVGDDH  180
QDRDLVNGSD LECHSQLLPM SDHTLEKLYE EYLQLLKAED DVQVQLDSFA ESLLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-37MYB family protein