PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028086427.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GRAS

Protein Properties

Length: 435aa MW: 47751.7 Da PI: 5.0125

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028086427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	85.1	1.2e-26	325	430	1	109
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL +cA+av++ d ++a++lL+r++++asp+gd ++Rla yf++AL+arla+++++ly+a+++++ s +++ l+ +++f +++P+ k+s+ XP_028086427.1 325 LRTLLSQCAQAVANADIRNANELLNRIRQHASPTGDGTERLAYYFANALEARLAGTGTSLYAAFKTKRIS---VADILKGYQVFMKACPFNKMSN 416 5789**********************************************************999999...****************** PP GRAS 96 ltaNqaIleavege 109 + aN+ I v+ + XP_028086427.1 417 MFANKSIAALVHDK 430 *****9988765 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MSMEALIQRF TGSFLDRNHH TYPDLPFNLV DGDAIHASPS PPTSVVSSEG DAGEEGDFSD 60 ATLKLISQML MEDGLENKPC MYQDCLALQA TEKSFYDVLG KQYPPHLSSD DNSPRTCSSD 120 SSNSSVSVND FIDQSSWIRE KFKPSYYDEY TFESIMQSIS SPNGSGDGSV DSLPFQISSE 180 AKFGELVPTT DYVNYRSEST WKVLEGAEQN QGDHPPHGSR EKKTHNREDA DYTDGAGRSN 240 KQLASFAEEA DDQLYDKVLL CPRLNPHLHQ DEPLHFLCTE HDDDDASSIV AGRKSPQNGV 300 AAKGANGGGR GRGKKQGNKK EVIDLRTLLS QCAQAVANAD IRNANELLNR IRQHASPTGD 360 GTERLAYYFA NALEARLAGT GTSLYAAFKT KRISVADILK GYQVFMKACP FNKMSNMFAN 420 KSIAALVHDK TDASL

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MSMEALIQRF TGSFLDRNHH TYPDLPFNLV DGDAIHASPS PPTSVVSSEG DAGEEGDFSD  60
ATLKLISQML MEDGLENKPC MYQDCLALQA TEKSFYDVLG KQYPPHLSSD DNSPRTCSSD  120
SSNSSVSVND FIDQSSWIRE KFKPSYYDEY TFESIMQSIS SPNGSGDGSV DSLPFQISSE  180
AKFGELVPTT DYVNYRSEST WKVLEGAEQN QGDHPPHGSR EKKTHNREDA DYTDGAGRSN  240
KQLASFAEEA DDQLYDKVLL CPRLNPHLHQ DEPLHFLCTE HDDDDASSIV AGRKSPQNGV  300
AAKGANGGGR GRGKKQGNKK EVIDLRTLLS QCAQAVANAD IRNANELLNR IRQHASPTGD  360
GTERLAYYFA NALEARLAGT GTSLYAAFKT KRISVADILK GYQVFMKACP FNKMSNMFAN  420
KSIAALVHDK TDASL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	8e-53	GRAS family protein