PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028086302.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 681aa MW: 75264.4 Da PI: 6.4618

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028086302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.8e-07	266	286	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg XP_028086302.1 266 PCPEFRK-GTCRQGDACEYAHG 286 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MEGIIEFEKK RRTFSKFSLL LELAATDDLI SFKIAHEEEA HDIDESSLWY GRRIGSKKMG 60 FEERTPLMIA AMFGSKQVLS YILETGRVDV NRACGSDRAT ALHCAVDGSS VNSPDVVRLL 120 LHAFADPNCL DANGNRPSDL INPYLYSSFN SKRKVVEFLL KGSNNIGEEC FLADQGFEHN 180 EEQNDQQMLT PTSSKDGSEK KEYPVDLSLP DIKNGIYGTD EFRMYTFKVK PCSRAYSHDW 240 TECPFVHPGE NARRRDPRKY HYSCVPCPEF RKGTCRQGDA CEYAHGIFEC WLHPAQYRTR 300 LCKDETGCSR RVCFFAHKPE ELRPLYASTG SAVPSPRSFS NGAPSLDMTS MSMLGHGSPL 360 LMPPTSTPPM TPSGASSPMG GSMSMWQNQH NIVPPTLQLP GSRLKSSWSA RDMDLDAELL 420 GLESHRRRQQ QQLMDEMSSL SSPTSWNCNL ATAAAFAASS FDRSGDFNRL GGVKPTNLDD 480 VFGSIDPAIL PQFQGLSLDA SASQAQSPTG MQMRQNMNQQ LRSTYPTSLS SSPARASSSM 540 GIDPSGASAA AAVLSSRAAA FAKRSQSFID RSTVNHLSGL PLPASSANVM PSNLSDWGSP 600 DGKLDWGIQK DELNKLRKSA SFGYRSNSSK SLVNDAPMVK SGHFDFEEQY QQYHLTSGGS 660 EILPSWVEQL YMEQEQMQMV A

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MEGIIEFEKK RRTFSKFSLL LELAATDDLI SFKIAHEEEA HDIDESSLWY GRRIGSKKMG  60
FEERTPLMIA AMFGSKQVLS YILETGRVDV NRACGSDRAT ALHCAVDGSS VNSPDVVRLL  120
LHAFADPNCL DANGNRPSDL INPYLYSSFN SKRKVVEFLL KGSNNIGEEC FLADQGFEHN  180
EEQNDQQMLT PTSSKDGSEK KEYPVDLSLP DIKNGIYGTD EFRMYTFKVK PCSRAYSHDW  240
TECPFVHPGE NARRRDPRKY HYSCVPCPEF RKGTCRQGDA CEYAHGIFEC WLHPAQYRTR  300
LCKDETGCSR RVCFFAHKPE ELRPLYASTG SAVPSPRSFS NGAPSLDMTS MSMLGHGSPL  360
LMPPTSTPPM TPSGASSPMG GSMSMWQNQH NIVPPTLQLP GSRLKSSWSA RDMDLDAELL  420
GLESHRRRQQ QQLMDEMSSL SSPTSWNCNL ATAAAFAASS FDRSGDFNRL GGVKPTNLDD  480
VFGSIDPAIL PQFQGLSLDA SASQAQSPTG MQMRQNMNQQ LRSTYPTSLS SSPARASSSM  540
GIDPSGASAA AAVLSSRAAA FAKRSQSFID RSTVNHLSGL PLPASSANVM PSNLSDWGSP  600
DGKLDWGIQK DELNKLRKSA SFGYRSNSSK SLVNDAPMVK SGHFDFEEQY QQYHLTSGGS  660
EILPSWVEQL YMEQEQMQMV A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-171	C3H family protein