PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028085687.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 305aa    MW: 35028.7 Da    PI: 4.4268
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028085687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.8e-1877130356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ Fe ++++  e+++++A++lgL+ rqV++WFqNrRa+ +
  XP_028085687.1  77 KKRRLTTDQVRCLERNFEVENKLEPERKAQIANELGLQPRQVTIWFQNRRARFR 130
                     56789***********************************************98 PP
2HD-ZIP_I/II125.42.5e-4076167192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+++qv++LE++Fe e+kLeperK+++a+eLglqprqv +WFqnrRAR++tkqlEkdy++Lk++yd lk++ + L ke+e+Lr+e++
  XP_028085687.1  76 EKKRRLTTDQVRCLERNFEVENKLEPERKAQIANELGLQPRQVTIWFQNRRARFRTKQLEKDYDSLKASYDGLKADYDILLKEKERLRNEVH 167
                     69**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MEGGTIFKNC NMTVILQNKS PHSSSELLES LWISNSSPSF HADSASCSTS MAPFFAHFEK  60
EENCNEDFDG CLYQPEKKRR LTTDQVRCLE RNFEVENKLE PERKAQIANE LGLQPRQVTI  120
WFQNRRARFR TKQLEKDYDS LKASYDGLKA DYDILLKEKE RLRNEVHLLT DKLLLTEKEN  180
PITEPTDFNN EMATDTHKQI TNATCESISE VPMEASKQED ASSAKSDVFD SESHSSLLEP  240
ADSAHAFRSD QSDFSQNEED ELTRTLLPPV CFPKLEDGDY NEQSPTNCCN WSFPVEDQPC  300
WLWPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-39HD-ZIP family protein