PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028085159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | SRS | ||||||||
Protein Properties | Length: 220aa MW: 23991.8 Da PI: 8.4102 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 224.1 | 2.7e-69 | 9 | 166 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.......kskkqsalsstkl 91 +++CqdCGnqakkdC h+RCRtCCksrgf C+thvkstWvpa+krrerqqq++ +++ +++ ++ + ++++++l + k+ ++l XP_028085159.1 9 EGMNCQDCGNQAKKDCGHMRCRTCCKSRGFPCETHVKSTWVPASKRRERQQQQQHLTAFQQHPQHPHPQQQNQQLslmmrgeNPKRLRENPGARL 103 579**********************************************9999999888877775555555555555655445555666667899 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s++s e+++ +lP+ev+s+avfrcvrvss+dd++ee+aYqtav+igGhvfkGiLydqG+e+ XP_028085159.1 104 PSTSSGLEVQVGHLPSEVNSPAVFRCVRVSSMDDADEEYAYQTAVNIGGHVFKGILYDQGPET 166 99***********************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MRRGGGGGEG MNCQDCGNQA KKDCGHMRCR TCCKSRGFPC ETHVKSTWVP ASKRRERQQQ 60 QQHLTAFQQH PQHPHPQQQN QQLSLMMRGE NPKRLRENPG ARLPSTSSGL EVQVGHLPSE 120 VNSPAVFRCV RVSSMDDADE EYAYQTAVNI GGHVFKGILY DQGPETHYGG GESSSGGGGA 180 QQLNLITAAT ATASNPAITM LDPSLYPFMA GTQFFPPPRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 2e-65 | SRS family protein |