PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028085086.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 493aa    MW: 54754.9 Da    PI: 5.966
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028085086.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.71.4e-1011064871374
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetsekn....sseelaalklfsev 87 
                     lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+Rlaa+ft AL+  l +  + +  ++l+  + ++++     +++laa++l++++
  XP_028085086.1 106 LVHLLMAAAEALTGVNKSreLARVILVRLKELVSPTDgSNMERLAAHFTDALQGLLDGaCGLHNKHTLTNGPHHHHRddhhPTDVLAAFQLLQDM 200
                     68***********85554449***********9987769*****************994344444444333332222345799************ PP

            GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                     sP++kf+h+taNqaIleav++++rvHi+D di++G+QW++L+qaL sR++gpp  +lRiT++++  s   s  +++etg+rL  fA+++g pf+f
  XP_028085086.1 201 SPYVKFGHFTANQAILEAVAHDRRVHIVDHDIMEGIQWASLMQALVSRKDGPPapHLRITAISRGGSCrrSIGTVQETGRRLVAFAASIGQPFSF 295
                     *************************************************776555*********776688999********************** PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsle 272
                     +    ++ e+++++ L++ +gEal+ n++l+l ++  ++ ++    +++L+  k+l+P++v++ve e+   +++ F+ rf+++l++ysa++dsle
  XP_028085086.1 296 HQCRLDSDETFRPSVLKLVKGEALVFNCMLHLPHFNYRTPESV---TSFLSGAKTLNPRLVTLVEDEVGPrSEGGFMGRFMDSLHHYSAMYDSLE 387
                     **9999*****************************96555555...59*******************9987999********************* PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrp 366
                     a++p + ++r+ vEr+++g++i   +a   ++     e+  +W e+l+++GF+p+++s  + +qaklll  ++ dgy+ ee  ++ lvlgWk+r+
  XP_028085086.1 388 AGFPMQGRARALVERVFFGPRIAGSLARIYRA--RGVEESCSWGEWLSAVGFHPIKISFANHCQAKLLLGLFN-DGYMGEELaNNRLVLGWKSRR 479
                     ****************************9998..5678899********************************.9****987589999******* PP

            GRAS 367 LvsvSaWr 374
                     L+svS+W+
  XP_028085086.1 480 LLSVSVWT 487
                     *******6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    
MAMVVDDTII PELDFSSYTT TTTSEDDYVC TWNDWSPVVD WEELSGGHDN FHDLIESMMD  60
DNAELQGLSC NSVSSTDMMV IEEHMEMNSS SSGSDGGIDD FKGLRLVHLL MAAAEALTGV  120
NKSRELARVI LVRLKELVSP TDGSNMERLA AHFTDALQGL LDGACGLHNK HTLTNGPHHH  180
HRDDHHPTDV LAAFQLLQDM SPYVKFGHFT ANQAILEAVA HDRRVHIVDH DIMEGIQWAS  240
LMQALVSRKD GPPAPHLRIT AISRGGSCRR SIGTVQETGR RLVAFAASIG QPFSFHQCRL  300
DSDETFRPSV LKLVKGEALV FNCMLHLPHF NYRTPESVTS FLSGAKTLNP RLVTLVEDEV  360
GPRSEGGFMG RFMDSLHHYS AMYDSLEAGF PMQGRARALV ERVFFGPRIA GSLARIYRAR  420
GVEESCSWGE WLSAVGFHPI KISFANHCQA KLLLGLFNDG YMGEELANNR LVLGWKSRRL  480
LSVSVWTSSD FDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-162GRAS family protein