PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028084299.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family B3
Protein Properties Length: 411aa    MW: 46689.7 Da    PI: 8.3206
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028084299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.4e-1318103299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     fk l     + +  l +p +f+ ++ +++++  +  +  +s   W+vk+  ++  +r + ++GW +F+k ++L++gDf+vF+++g++ f   v++
  XP_028084299.1  18 FKPL--LPGFHH-GLKIPVSFF-KYLNNENC--EHAVLRTSCGMWQVKI--EGD-QR-FEGAGWTDFAKRHDLQVGDFLVFRHEGDMVF--DVMA 100
                     5555..445555.5********.88666555..56666778999*****..444.45.599**********************999999..7877 PP

                     E-S CS
              B3  97 frk 99 
                     f++
  XP_028084299.1 101 FDQ 103
                     775 PP
2B363.33.8e-20177268396
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + +++++++ +rl +p+ fa++ g++ ++  +++++d ++ +sW+v+l   k++g++++++GW+eF  angLk+gD++ F+l+  +++++v+++
  XP_028084299.1 177 VTILKPYSFEASRLFIPRGFARSEGLIDRRC-EMIIRDeQQQKSWQVRL-SHKCDGQVYIGRGWREFRIANGLKQGDTLSFELIC-KGTKPVIGF 268
                     4555899999**************9997765.8888994666*******.5888889**************************99.788888875 PP
3B357.13.2e-18302391492
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE.. CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefel 92 
                     ++++++++k + l++pk+fa+ +g++k +  ++t++d + r+W ++++ +k+++r y+ ++GWkeF+ an+Lk gD++ + l +   ++ ++
  XP_028084299.1 302 ATLTPHNFKCSELYIPKEFARLNGISKYS--EMTIKDGKQREWVMNMRRQKCGKRlYIGQQGWKEFAAANHLKNGDVIKLGLLKAgkKTLTM 391
                     345888999999********999998765..79999***********8888888888888*******************9977541244444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    
MATTTTTTGI VPSKPHFFKP LLPGFHHGLK IPVSFFKYLN NENCEHAVLR TSCGMWQVKI  60
EGDQRFEGAG WTDFAKRHDL QVGDFLVFRH EGDMVFDVMA FDQSACEREY QPLDVDDDDE  120
EDEDEDEDKD DEESSESESS KDISQSNKIF NNSPKASHPK GGGGGASCSK PSHPYFVTIL  180
KPYSFEASRL FIPRGFARSE GLIDRRCEMI IRDEQQQKSW QVRLSHKCDG QVYIGRGWRE  240
FRIANGLKQG DTLSFELICK GTKPVIGFHW LKGNSRANEM VNAKMEKSST NTKLTTPQYF  300
IATLTPHNFK CSELYIPKEF ARLNGISKYS EMTIKDGKQR EWVMNMRRQK CGKRLYIGQQ  360
GWKEFAAANH LKNGDVIKLG LLKAGKKTLT MNFTFFGGSS RTKGLHNGSN N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.12e-47B3 family protein