PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028084056.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 659aa    MW: 72718.3 Da    PI: 5.2663
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028084056.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.99.6e-1322936581374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..s...vselykalppsetseknsseelaalklfsevsPi 90 
                     lv+ Ll+cAeav+++d  l +++L +l+  ++p gd+mqR+a++fteAL+arla       +++++k ++p +    ns e l++++++++++P+
  XP_028084056.1 293 LVHHLLACAEAVAKEDYMLGRRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAAtlAtkpSPSISKPFTPFPP---NSLEILKIYQILYQACPY 384
                     689**************************************************983211113344444444444...59**************** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     +kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l+vpfef++ v ++
  XP_028084056.1 385 IKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPETVRETGRCLTELAHSLHVPFEFHP-VGEQ 474
                     ***********************************************************....9**************************.7*** PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     ledl++++++ + gEalaVn+v  lhrl+  +++      ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s 
  XP_028084056.1 475 LEDLKPHMFNRRVGEALAVNSVNCLHRLP--PGNCL---GNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSA 564
                     ****************************9..44333...36****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +r+kvE+ ++++ei+n+vaceg er++rhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgyr+ e+++sl+lgW+dr+++++SaWr
  XP_028084056.1 565 QRAKVEQYIFAPEIRNIVACEGPERVMRHERLEKWRKIMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDKDSLLLGWQDRAILAASAWR 658
                     *********************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    
MINTLCGSMG SLKSEVGSLK TENSCTKMPP TSPNESVADS KKITPPSSID YDQNSCLTPS  60
SLSLPALKFE VDGDIEVQSP DSAVWESFFS DQLDGDFMIS SPVRNISSTQ ASNHNYNYNY  120
VQSMHGQSLL GCSPPRSSSL LGAAFSSTQK GKGQSPLHRV FNSPNNQYMQ LESLSLPGLE  180
SFLDDFERDD DLIAFDAVTT VPALLDCLAM PNSSRFCGSM SETSVLGGSQ LTQESEIYQQ  240
VGSVSTAPLS QQLQEERQQE KQQQQSQPPQ NINHSMLVAP PIGPEEQDSG LQLVHHLLAC  300
AEAVAKEDYM LGRRYLHHLN RVVTPLGDSM QRVASCFTEA LSARLAATLA TKPSPSISKP  360
FTPFPPNSLE ILKIYQILYQ ACPYIKFAHF TANQAIFEAF EAEERVHVID LDILQGYQWP  420
AFMQALAARP GGAPFLRITG VGPSPETVRE TGRCLTELAH SLHVPFEFHP VGEQLEDLKP  480
HMFNRRVGEA LAVNSVNCLH RLPPGNCLGN LLAMIRDQAP NIVTIVEQEA SHNGPYFLGR  540
FLEALHYYSA IFDSLDATFP PDSAQRAKVE QYIFAPEIRN IVACEGPERV MRHERLEKWR  600
KIMEGKGFKG VPLSANAVTQ SKILLGLYSC DGYRLTEDKD SLLLGWQDRA ILAASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-94GRAS family protein