PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028083687.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GRF

Protein Properties

Length: 495aa MW: 53528 Da PI: 9.1536

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028083687.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.3	7.4e-25	129	173	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v++++k+C+rH+hrgr rsrk++e+ XP_028083687.1 129 DPEPGRCRRTDGKKWRCSREVVPDQKYCQRHMHRGRLRSRKHVEA 173 79*****************************************97 PP
2	WRC	55.3	1.2e-17	377	412	3	38
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 e rC+RtDGKkWRCsr+v++ +k+C Hlhrg ++ XP_028083687.1 377 ELQRCKRTDGKKWRCSRDVVPYQKYCGLHLHRGAKK 412 668*****************************9765 PP
3	QLQ	43.4	1.1e-15	58	92	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQ++++ +Q l++Ky+aa++PvP +L+++i++ XP_028083687.1 58 FTSAQFHEFHQQDLIFKYIAAGLPVPFHLIFPIWR 92 *********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MSSCMLAVTK KEWLIKIEEE EGSIAEESSP SIKLGLGIGD CCSGGESHVK PAAAALLFTS 60 AQFHEFHQQD LIFKYIAAGL PVPFHLIFPI WRSVATSFGG SANAGIYNLY PSFIGFSPQG 120 FPDYRSMMDP EPGRCRRTDG KKWRCSREVV PDQKYCQRHM HRGRLRSRKH VEASKIPSES 180 CTATTLNCKN TTTTINTSDS PNMESNLLTL VPVNLQLATP SSSRTNITSI GDINGSDNNV 240 NAEKDSTPTT ASIGGINGSN NNVNAKKDST ATLTTYGRNI ARNKNVYGSE GTTTTGLMSA 300 TADHNNRRRD DDCVDGNNAS YNHHNNRINS KRSINDGHNV NAGSLPASGF GFSPKSVLQV 360 VGCSSSCLGY KNVLETELQR CKRTDGKKWR CSRDVVPYQK YCGLHLHRGA KKLVSATQSV 420 TVAAAAPPIR NILAPPPLAI PKKTNGRIKL DTNLSISIAA SPRQKTDDEK SSSTSSDATT 480 ITDENGSMSH LAVSP

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MSSCMLAVTK KEWLIKIEEE EGSIAEESSP SIKLGLGIGD CCSGGESHVK PAAAALLFTS  60
AQFHEFHQQD LIFKYIAAGL PVPFHLIFPI WRSVATSFGG SANAGIYNLY PSFIGFSPQG  120
FPDYRSMMDP EPGRCRRTDG KKWRCSREVV PDQKYCQRHM HRGRLRSRKH VEASKIPSES  180
CTATTLNCKN TTTTINTSDS PNMESNLLTL VPVNLQLATP SSSRTNITSI GDINGSDNNV  240
NAEKDSTPTT ASIGGINGSN NNVNAKKDST ATLTTYGRNI ARNKNVYGSE GTTTTGLMSA  300
TADHNNRRRD DDCVDGNNAS YNHHNNRINS KRSINDGHNV NAGSLPASGF GFSPKSVLQV  360
VGCSSSCLGY KNVLETELQR CKRTDGKKWR CSRDVVPYQK YCGLHLHRGA KKLVSATQSV  420
TVAAAAPPIR NILAPPPLAI PKKTNGRIKL DTNLSISIAA SPRQKTDDEK SSSTSSDATT  480
ITDENGSMSH LAVSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-29	GRF family protein