PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028083684.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GRF

Protein Properties

Length: 496aa MW: 53661.1 Da PI: 9.2406

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028083684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.3	7.4e-25	130	174	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v++++k+C+rH+hrgr rsrk++e+ XP_028083684.1 130 DPEPGRCRRTDGKKWRCSREVVPDQKYCQRHMHRGRLRSRKHVEA 174 79*****************************************97 PP
2	WRC	55.3	1.2e-17	378	413	3	38
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 e rC+RtDGKkWRCsr+v++ +k+C Hlhrg ++ XP_028083684.1 378 ELQRCKRTDGKKWRCSRDVVPYQKYCGLHLHRGAKK 413 668*****************************9765 PP
3	QLQ	43.4	1.1e-15	59	93	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQ++++ +Q l++Ky+aa++PvP +L+++i++ XP_028083684.1 59 FTSAQFHEFHQQDLIFKYIAAGLPVPFHLIFPIWR 93 *********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MEPKPSDSGK KKEWLIKIEE EEGSIAEESS PSIKLGLGIG DCCSGGESHV KPAAAALLFT 60 SAQFHEFHQQ DLIFKYIAAG LPVPFHLIFP IWRSVATSFG GSANAGIYNL YPSFIGFSPQ 120 GFPDYRSMMD PEPGRCRRTD GKKWRCSREV VPDQKYCQRH MHRGRLRSRK HVEASKIPSE 180 SCTATTLNCK NTTTTINTSD SPNMESNLLT LVPVNLQLAT PSSSRTNITS IGDINGSDNN 240 VNAEKDSTPT TASIGGINGS NNNVNAKKDS TATLTTYGRN IARNKNVYGS EGTTTTGLMS 300 ATADHNNRRR DDDCVDGNNA SYNHHNNRIN SKRSINDGHN VNAGSLPASG FGFSPKSVLQ 360 VVGCSSSCLG YKNVLETELQ RCKRTDGKKW RCSRDVVPYQ KYCGLHLHRG AKKLVSATQS 420 VTVAAAAPPI RNILAPPPLA IPKKTNGRIK LDTNLSISIA ASPRQKTDDE KSSSTSSDAT 480 TITDENGSMS HLAVSP

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MEPKPSDSGK KKEWLIKIEE EEGSIAEESS PSIKLGLGIG DCCSGGESHV KPAAAALLFT  60
SAQFHEFHQQ DLIFKYIAAG LPVPFHLIFP IWRSVATSFG GSANAGIYNL YPSFIGFSPQ  120
GFPDYRSMMD PEPGRCRRTD GKKWRCSREV VPDQKYCQRH MHRGRLRSRK HVEASKIPSE  180
SCTATTLNCK NTTTTINTSD SPNMESNLLT LVPVNLQLAT PSSSRTNITS IGDINGSDNN  240
VNAEKDSTPT TASIGGINGS NNNVNAKKDS TATLTTYGRN IARNKNVYGS EGTTTTGLMS  300
ATADHNNRRR DDDCVDGNNA SYNHHNNRIN SKRSINDGHN VNAGSLPASG FGFSPKSVLQ  360
VVGCSSSCLG YKNVLETELQ RCKRTDGKKW RCSRDVVPYQ KYCGLHLHRG AKKLVSATQS  420
VTVAAAAPPI RNILAPPPLA IPKKTNGRIK LDTNLSISIA ASPRQKTDDE KSSSTSSDAT  480
TITDENGSMS HLAVSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-29	GRF family protein