PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028083478.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

RAV

Protein Properties

Length: 359aa MW: 41069.9 Da PI: 5.6855

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028083478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.7	1.8e-10	44	91	1	54
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s++kGV ++g W A+I+ + +r++lg+f ++ eAa a++ a+ kl+ XP_028083478.1 44 SRFKGVV-SQQNGNWGAQIYA------NhQRIWLGTFKSESEAAMAYDSAAIKLR 91 789*6.5558**999......44******88**********98 PP
2	B3	87.3	1.3e-27	164	261	1	86
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ltpsdv++++rlv+pkk+a ++ gg+ e+++l+++d+ rsW+++++y+k+s+++v+t+GW++Fvk+n+Lke+D+v+ XP_028083478.1 164 FQKELTPSDVGQLNRLVIPKKYALRYfprihedgkenpsdGGV--EDVQLVFYDRLMRSWKFRYCYWKSSQSFVFTRGWNRFVKENELKEKDIVI 256 99**************************9977666554444..8899******************************************** PP EEE-S CS B3 82 Fkldg 86 F++ + XP_028083478.1 257 FSMCE 261 *9543 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEEETSMALN AATTLTKEAL DLNSSTPSLH HNKRPRHNIG VSASRFKGVV SQQNGNWGAQ 60 IYANHQRIWL GTFKSESEAA MAYDSAAIKL RSGDSHRNLP WTNVTFQEPY FQSHFSTEAV 120 LNMIKDGSYP SKFDDFLRMQ FPEGKKEKLV PKNGNGGFLC RQLFQKELTP SDVGQLNRLV 180 IPKKYALRYF PRIHEDGKEN PSDGGVEDVQ LVFYDRLMRS WKFRYCYWKS SQSFVFTRGW 240 NRFVKENELK EKDIVIFSMC ECREGSNQIR TFCMIHVAFD DWVDSNASGV EDTDQNAEDI 300 VDHREDEEGS EEEALGLRLW ENIGGGKNAK EIEEDKEATK AESTGAEKKG LWIFGVQIC

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEEETSMALN AATTLTKEAL DLNSSTPSLH HNKRPRHNIG VSASRFKGVV SQQNGNWGAQ  60
IYANHQRIWL GTFKSESEAA MAYDSAAIKL RSGDSHRNLP WTNVTFQEPY FQSHFSTEAV  120
LNMIKDGSYP SKFDDFLRMQ FPEGKKEKLV PKNGNGGFLC RQLFQKELTP SDVGQLNRLV  180
IPKKYALRYF PRIHEDGKEN PSDGGVEDVQ LVFYDRLMRS WKFRYCYWKS SQSFVFTRGW  240
NRFVKENELK EKDIVIFSMC ECREGSNQIR TFCMIHVAFD DWVDSNASGV EDTDQNAEDI  300
VDHREDEEGS EEEALGLRLW ENIGGGKNAK EIEEDKEATK AESTGAEKKG LWIFGVQIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-105	RAV family protein