PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028082816.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 439aa MW: 47112.5 Da PI: 5.8958

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028082816.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.8e-10	279	327	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq XP_028082816.1 279 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 327 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MGTEDNCSLR FQQTCGGGDS ILNCPSSVMN TNPLSDKVAE MAMSSGSMFK SSSSGADLYF 60 GSGWDPLVSL GQGKNFGGSS VVPSSEFGNS PYSVALENQA IPSSTSHFVH YLSDSGLVEM 120 VPKLSCLGSG CFSDMASPFG LPECAQIAST GCPSNYTQND HGTEKISTNG ALCQGEYPIS 180 EEGIMGITPC GKGKKRVSES NSPFNPTKNG EGDPNTDNSG NSSEYREVQD GKKQKIERNV 240 SADLHGKQTG KQPKGSSNSG EETKENYIHV RARRGQATNS HSLAERVRRE RISERMRLLQ 300 ELVPGCNKIT GKAVMLDEII NYVQSLQQQV EFLSMKLATV NPELNIDIER ILSKEIQHSR 360 GSSVAIPGFG PGTSSYRPYL QGLPQGALPG VPSTSPFHSM PQMQNVWDNE FQSLLQMGFD 420 SNPAIGNLGP NAGRSKLEL

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MGTEDNCSLR FQQTCGGGDS ILNCPSSVMN TNPLSDKVAE MAMSSGSMFK SSSSGADLYF  60
GSGWDPLVSL GQGKNFGGSS VVPSSEFGNS PYSVALENQA IPSSTSHFVH YLSDSGLVEM  120
VPKLSCLGSG CFSDMASPFG LPECAQIAST GCPSNYTQND HGTEKISTNG ALCQGEYPIS  180
EEGIMGITPC GKGKKRVSES NSPFNPTKNG EGDPNTDNSG NSSEYREVQD GKKQKIERNV  240
SADLHGKQTG KQPKGSSNSG EETKENYIHV RARRGQATNS HSLAERVRRE RISERMRLLQ  300
ELVPGCNKIT GKAVMLDEII NYVQSLQQQV EFLSMKLATV NPELNIDIER ILSKEIQHSR  360
GSSVAIPGFG PGTSSYRPYL QGLPQGALPG VPSTSPFHSM PQMQNVWDNE FQSLLQMGFD  420
SNPAIGNLGP NAGRSKLEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	5e-62	bHLH family protein