PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028082579.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27748.4 Da PI: 10.1779 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.7 | 1.7e-19 | 10 | 52 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +i ++s r+ t+ kR++g++KKA+ELS+LC+++++vii s++ XP_028082579.1 10 FITSDSERKATLKKRKKGLMKKASELSTLCGIDACVIIHSPNE 52 799*************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MPRKKMKLAF ITSDSERKAT LKKRKKGLMK KASELSTLCG IDACVIIHSP NESQPEVWPN 60 NLGVQRVLAK FKRIPEMEQS KKMMTQESFI RQRIAKANEQ LKKQLKNNRE KEMTEVMYQC 120 LSGRGLQNLS MVDQYDLNWL IDQNLKEIGK KIESLKKTPQ RVAPVALMNT KEMLGNGMHR 180 EEEKLLGVDL AMDAMKRSHG FNEWMNNPLY ENMGFDWDKM MVPFGDNHNL MWSSFFFP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKMKLAFITSDSERKATLKKRK |
2 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-51 | M-type_MADS family protein |