PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028081959.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 316aa MW: 35551.1 Da PI: 4.6365

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028081959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.8e-18	84	137	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q++ Le+ Fe ++++ e+++++A++lgL+ rqV +WFqNrRa+ k XP_028081959.1 84 KKRRLAADQVQFLEKNFEVENKLEPERKAQIATELGLQPRQVAIWFQNRRARSK 137 5568999*********************************************99 PP
2	HD-ZIP_I/II	125.2	3.1e-40	83	174	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+++qv++LE++Fe e+kLeperK+++a+eLglqprqva+WFqnrRAR ktkqlEkdy++Lk++yd+l+++ e L ke+e+Lr+e++ XP_028081959.1 83 EKKRRLAADQVQFLEKNFEVENKLEPERKAQIATELGLQPRQVAIWFQNRRARSKTKQLEKDYDSLKASYDRLTNDYECLLKEKERLRNEVR 174 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MEGGRVYGGS NMTVTHQNNS LPCSSQVLES LWISNSPPSF HGESLSCSTS MVGNPTDRQF 60 SPPLDKEEHG NEDHYDACFN QPEKKRRLAA DQVQFLEKNF EVENKLEPER KAQIATELGL 120 QPRQVAIWFQ NRRARSKTKQ LEKDYDSLKA SYDRLTNDYE CLLKEKERLR NEVRFLSDKL 180 LTGQKENTNP TVAEPQKHII SNADSENKAK AAMVVCECKQ EEASSAKSDV FDSDSPHCTD 240 GNHSSILEPA DSSNVFGGAE QSDFSQDDEQ DELTRSLLPP PCFPKLEVGG CYNDTPASSC 300 NWNFSVEGQP SWLWPY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	140	RRARSKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-43	HD-ZIP family protein