PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028080802.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 24006 Da PI: 9.2543 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 105.2 | 5.3e-33 | 3 | 94 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC+++Cvlap fp +++++f++vhk+FG+sn +k++k+l+ee+r++a++slv+eA +r++dP+ G +g ++k+ ++l+ k+ XP_028080802.1 3 ACASCKHQRKKCTDKCVLAPFFPVNKSREFQAVHKVFGVSNATKIVKNLKEEDRKKAIDSLVWEAFCRLKDPILGPYGEYRKVYEELKLYKS 94 7**********************************************************************************999988775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MPACASCKHQ RKKCTDKCVL APFFPVNKSR EFQAVHKVFG VSNATKIVKN LKEEDRKKAI 60 DSLVWEAFCR LKDPILGPYG EYRKVYEELK LYKSSQYQQI LQVPEEGGGM VYEPTSLVGW 120 NNTNTNTNNN AIIHKGTSMV GVANYNNNNT NYIHHNNGNS ISNSSPYTYS LNHHNIHGME 180 RIRQERHVGS AVDVVLPQQN SVNSLNQQYY L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-45 | LBD family protein |