PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028080219.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

bHLH

Protein Properties

Length: 613aa MW: 69080.2 Da PI: 5.9853

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028080219.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.5	5.7e-14	419	465	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ErrRR++iN++f+ L +l+P+ K++K++iL +++Y+k+L+ XP_028080219.1 419 NHVLSERRRREKINKRFSVLGSLVPST-----SKVNKVSILDNTIKYLKDLE 465 78899*******************7.....6**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MASGGHHNQE GVPEDLRNQL AVAVRTIQWS YAIFWSISSR QPGVLEWGDG YYNGDIKTRK 60 TVQAVEFNAD QLGLQRSEQL RELYESLSTG ESSPQARRPS AALSPEDLTD TEWYYLVCMS 120 FVFNIGQGLP GRTLANGQPI WLCNAHYADS KVFSRSLLAK SASIQTVVCF PFLGGVVELG 180 VTDLILEDPG FIQHIKTSFL EIPYPIVYEA SDKDLIHATL DRDILDDTNF NPIVGCEELN 240 VCSPNDSSNK FGLNEESFMV EGLNDEVSNC VHNSMSSSDC ISQTLVSPKT VCPFLKGQNE 300 NDGFLLDLQE QNQMKPASTG LQDNDIHYQS VLSTLLKTSH QLILGPNVRN CNQESSFVRW 360 KKCSFVGIQM PRIGTPQRLL KKVLFEVAQM HSVFLLDSRE NNGERDGLWR PQVDDIDSNH 420 VLSERRRREK INKRFSVLGS LVPSTSKVNK VSILDNTIKY LKDLERRVEE LDSFKEVVEQ 480 EARTRRKPQD SAERTSDNYA NNIKKPLINK RKACDIGEIE PEINQMVLKN SSNDSVTVSM 540 IEKDVLIEVR CPWRECLLLE IMDAISHLHL DSYSIQSTNT DGILSLTAKS KFKGSKVASA 600 RIIRQALQRV VRK

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MASGGHHNQE GVPEDLRNQL AVAVRTIQWS YAIFWSISSR QPGVLEWGDG YYNGDIKTRK  60
TVQAVEFNAD QLGLQRSEQL RELYESLSTG ESSPQARRPS AALSPEDLTD TEWYYLVCMS  120
FVFNIGQGLP GRTLANGQPI WLCNAHYADS KVFSRSLLAK SASIQTVVCF PFLGGVVELG  180
VTDLILEDPG FIQHIKTSFL EIPYPIVYEA SDKDLIHATL DRDILDDTNF NPIVGCEELN  240
VCSPNDSSNK FGLNEESFMV EGLNDEVSNC VHNSMSSSDC ISQTLVSPKT VCPFLKGQNE  300
NDGFLLDLQE QNQMKPASTG LQDNDIHYQS VLSTLLKTSH QLILGPNVRN CNQESSFVRW  360
KKCSFVGIQM PRIGTPQRLL KKVLFEVAQM HSVFLLDSRE NNGERDGLWR PQVDDIDSNH  420
VLSERRRREK INKRFSVLGS LVPSTSKVNK VSILDNTIKY LKDLERRVEE LDSFKEVVEQ  480
EARTRRKPQD SAERTSDNYA NNIKKPLINK RKACDIGEIE PEINQMVLKN SSNDSVTVSM  540
IEKDVLIEVR CPWRECLLLE IMDAISHLHL DSYSIQSTNT DGILSLTAKS KFKGSKVASA  600
RIIRQALQRV VRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	424	429	ERRRRE
2	425	430	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein