PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028079943.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 615aa MW: 66956.5 Da PI: 9.0042

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028079943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_028079943.1 82 FICEVCNKGFQREQNLQLHRRGH 104 89*******************88 PP
2	zf-C2H2	13.8	0.00017	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ XP_028079943.1 159 YKCEKCSKKYAVQSDWKAHSKTC 181 9******************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MELLKQNMAA VASSSVSFFG IRDEDQIQMK QQLQQHFSIP TSSTTPPTTA PQKKRRNLPG 60 TPNPDAEVIA LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKNTKEVVK 120 RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY FRKHGEKKYK CEKCSKKYAV QSDWKAHSKT 180 CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQETARHPSS LSTIGSHLYG SNNMSLGLSQ 240 VGSQVSSLQS HHHHPSTNLL RFGTADSAAV GAKYEQIIPP NPSSLNHPLQ SMPSHALFIP 300 DSNQGYQEQQ QQHQHGLVPN KSFIGLMQLP DLQTNTNNSS SAAANLINPG FFSGSCTTTT 360 STMNNFNSAT ENHNNTHLLS PDFLMPDHQF KNGSGGSLFH GNNMSDSVGN SGLSSLYNNT 420 SPQHESLPPA MSATALLQKA AQMGSTTSTN NGASLLKGLA NSSSTTGAES ERQLVSLNFR 480 GNNKRGGNEH RLQGLMNSLA NATSSAPMFC SGSTEGDNSY IRFDGSENTF EQQHNSVNFG 540 HMDESKLHQN FTLSIGGSNR MTLDFLGLGG GMVRNMGGGT GAGGFSQTEQ QHGVDISSFD 600 PKINSAQASH VFGAP

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MELLKQNMAA VASSSVSFFG IRDEDQIQMK QQLQQHFSIP TSSTTPPTTA PQKKRRNLPG  60
TPNPDAEVIA LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKNTKEVVK  120
RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY FRKHGEKKYK CEKCSKKYAV QSDWKAHSKT  180
CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQETARHPSS LSTIGSHLYG SNNMSLGLSQ  240
VGSQVSSLQS HHHHPSTNLL RFGTADSAAV GAKYEQIIPP NPSSLNHPLQ SMPSHALFIP  300
DSNQGYQEQQ QQHQHGLVPN KSFIGLMQLP DLQTNTNNSS SAAANLINPG FFSGSCTTTT  360
STMNNFNSAT ENHNNTHLLS PDFLMPDHQF KNGSGGSLFH GNNMSDSVGN SGLSSLYNNT  420
SPQHESLPPA MSATALLQKA AQMGSTTSTN NGASLLKGLA NSSSTTGAES ERQLVSLNFR  480
GNNKRGGNEH RLQGLMNSLA NATSSAPMFC SGSTEGDNSY IRFDGSENTF EQQHNSVNFG  540
HMDESKLHQN FTLSIGGSNR MTLDFLGLGG GMVRNMGGGT GAGGFSQTEQ QHGVDISSFD  600
PKINSAQASH VFGAP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-104	C2H2 family protein