PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028078849.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 527aa    MW: 57843.4 Da    PI: 5.6955
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028078849.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.41.4e-1311455081374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv+lL++cA  v+ g+++la +l+ +++el  + ++   + ++a yf+eAL++rl+   ++ + a+        +  e+   ++ f+e++P+lkf
  XP_028078849.1 145 LVHLLMTCAGSVQRGEFSLAVSLIDEMNELltRVNTSCGIGKVAVYFVEALSRRLFT--PQGAGAIG-------SAYENEILYHHFYEACPYLKF 230
                     68****************************54444446899***************9..33333332.......24455577899********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gppslR+Tg+g+p+s+ +++l+e+g rLa++A++++v+f f+ +va+rled
  XP_028078849.1 231 AHFTANQAILEAFDGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPSLRLTGIGPPSSDGHDSLREIGLRLAELAHSVNVRFAFRGVVASRLED 325
                     *********************************************************************************************** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++++L+v+++E++a+n+++qlhrll ++ + +s++d vL  ++sl+Pk+++vveqea+hn+++Fl+rf+eal+yys++fdslea     ++ ++
  XP_028078849.1 326 VKPWMLQVSSKEVVAINSSMQLHRLLVSDPTRASPIDIVLGWIRSLNPKIMTVVEQEANHNQPEFLNRFTEALYYYSTMFDSLEAC---SAQPEK 417
                     ***********************************************************************************999...456666 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        +++++rei+nvv+ceg +r+erhe l+kWr+rl+eaGF+p++l+++a kqa++ll  ++ +gy+vee++g+l+lgW++rpL+++SaW+
  XP_028078849.1 418 AFAEMYIEREISNVVCCEGLARVERHEPLAKWRARLGEAGFRPLHLGSNAFKQASMLLTLFSAQGYHVEENEGCLTLGWHSRPLIAASAWQ 508
                     677788************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    
MGPYDSSISS SGSSSSCGGK APDHVDGLLA GAGYKVRSLD LLQVAQRLER LETIMVNAPS  60
DISHLANDAV HYNPSDLSSW VDSLLSELNQ PIPAFSDLAF PEGPSSDQTV HTSAWTDHHA  120
AEQHQEIPQK PTAVTTVEED SGIRLVHLLM TCAGSVQRGE FSLAVSLIDE MNELLTRVNT  180
SCGIGKVAVY FVEALSRRLF TPQGAGAIGS AYENEILYHH FYEACPYLKF AHFTANQAIL  240
EAFDGHDCVH VIDFNLMHGL QWPALIQALA LRPGGPPSLR LTGIGPPSSD GHDSLREIGL  300
RLAELAHSVN VRFAFRGVVA SRLEDVKPWM LQVSSKEVVA INSSMQLHRL LVSDPTRASP  360
IDIVLGWIRS LNPKIMTVVE QEANHNQPEF LNRFTEALYY YSTMFDSLEA CSAQPEKAFA  420
EMYIEREISN VVCCEGLARV ERHEPLAKWR ARLGEAGFRP LHLGSNAFKQ ASMLLTLFSA  480
QGYHVEENEG CLTLGWHSRP LIAASAWQTI SEPSPSFGSI SHHNNVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-153GRAS family protein