PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028078164.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

LBD

Protein Properties

Length: 305aa MW: 33713.8 Da PI: 7.3095

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028078164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.2	2.8e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv k+l++l+ +reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l+q++ +l XP_028078164.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKILNELNAAQREDAVNSLAYEADARLRDPVYGCVGLISILQHRLKQVQIDLY 101 7********************************************************************************************99 PP DUF260 96 llkee 100 ++k+e XP_028078164.1 102 HAKKE 106 98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK ILNELNAAQR 60 EDAVNSLAYE ADARLRDPVY GCVGLISILQ HRLKQVQIDL YHAKKELATY IGPSAMLPIL 120 QHPGFMQNNP ASSSMIPYNM NSMSMLGLPA SHNAQLVIRD AQPHHQHHQQ MIEAQQLAAA 180 VAAREQQEML RNYEQQQQQQ QELVRFNSGF DPGPVGGGGG GGGASGFNQM TSTGAMSPSL 240 ALGSFDNPYQ IQQQPQDHTH HHHHHHQLQL EPQLLLHQQQ PQQPQTPQQQ QRSGSEEGRS 300 VGPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	7e-78	LBD family protein