PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028077901.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 152aa MW: 17383.6 Da PI: 10.1916 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.2 | 3.2e-16 | 2 | 51 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk vt+ kR + ++KK ELS+L ++++ ++f+++gk+ +++ XP_028077901.1 2 KRIENKKALRVTYMKRNECVIKKTMELSILYGINIVTLYFGPNGKVDTWP 51 79***********************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence |
MKRIENKKAL RVTYMKRNEC VIKKTMELSI LYGINIVTLY FGPNGKVDTW PQNPNEVKAL 60 IKMYKEYAKK SQVRKSHESS FSDCCLGAKK VAKKVLVENQ DGYGWLDGLS AESVISFLGK 120 LESKLEVLKA RIEFLKMLNE QKTKVVVMGK ET |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11250.1 | 2e-11 | M-type_MADS family protein |