PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G11250.1
Common NameAGL52
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 329aa    MW: 37834.4 Da    PI: 8.3715
Description AGAMOUS-like 52
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G11250.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.6e-24553351
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ++++s + +++++R+++i+KKAeELS+LC+++v+vi+++++g l+++++
  AT4G11250.1  5 SSSSSCNPTSLTNRLKTIFKKAEELSILCAIDVCVIYYGPDGDLRTWPK 53
                 7899999****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0037154IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-151284IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.9091355IPR002100Transcription factor, MADS-box
PfamPF003191.2E-121351IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020090anatomyembryo sac central cell
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKQASSSSSC NPTSLTNRLK TIFKKAEELS ILCAIDVCVI YYGPDGDLRT WPKDRETVKN  60
MALRYKEDRK RKKCLNLHEF LEKEKVKDKD KYKGKTNYVK NPNWYPNFDH YSPQQLSQLI  120
QSLERTLSTL QKRLRIVESQ KKQNTNLVHQ SLTPSYLNQT QHLDPSKFSL YMYNHGDATL  180
SQLPLSASQS NQLINYQMQH GFGQNMCLDN ITNNNNFQHP GVSNTQDYSP LLSANNYGLN  240
NHLMQQQDQL HGFDQNLCMM SEIINNNNGL QHPNLSNTVP HEFPYGNTSF SQDMFSSYDG  300
SSLLQTSSLP PLHNIPNSYC FSDNSRLLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16872RKRKK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184134980.0
Genevisible255514_s_at1e-60
Expression AtlasAT4G11250-
AtGenExpressAT4G11250-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G11250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G04640, AT5G27130, AT5G38620, AT5G49420, AT1G46408, AT1G48150, AT1G60880, AT1G60920
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G11250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0968820.0AL096882.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F8L21 (ESSA project).
GenBankAL1615310.0AL161531.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31.
GenBankAY1412160.0AY141216.1 Arabidopsis thaliana MADS-box protein AGL52 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_192864.10.0AGAMOUS-like 52
SwissprotQ9FLL01e-67AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLQ9SUT60.0Q9SUT6_ARATH; AGAMOUS-like 52
STRINGAT4G11250.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Representative plantOGRP6766218
Publications ? help Back to Top
  1. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  2. Parenicová L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  3. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  4. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  5. Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
    An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
    Plant Physiol., 2010. 154(1): p. 287-300
    [PMID:20631316]
  6. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]