PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028077641.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 504aa    MW: 57075.6 Da    PI: 4.5931
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028077641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS135.46e-421385042374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL +  ea++ +++ela+ +++ + e +sp g++++Rla+ +         +     y   + +  ++++s++  +a+k+f++ +P+ +f+h+
  XP_028077641.1 138 QHLLKAYGEAMEMEHKELAEVIVKSIIEKVSPVGETLERLAFNLF--------K-----YGGQQGQYLKQESSKNLKTAFKAFYQNFPYGRFAHF 219
                     688889999*******************************98643........3.....12222222333346778889999************* PP

            GRAS  97 taNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     taN aIlea+  + e+vHi+Df   +G+QW+++++a a+ ++    lRiT ++s e      s+ + eet++rL + A+++g++++ + +  k+l
  XP_028077641.1 220 TANLAILEAMPANaETVHIVDFHTREGVQWAPMIEAVAQLRK---ALRITLIKSGEDCgtdsSNWRFEETQRRLCDHARSCGLNLKVEEVRIKDL 311
                     **********98879***********************8654...6********77668999999************************955555 PP

            GRAS 187 edleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk......vvvvveqeadhnse...sFlerflealeyysalfdsl 271
                     ++   ++ ++ + +E la n++  l ++   +  ++s+  e+L++ k+l ++      ++++ + +a    +    +   f   l++y al +s+
  XP_028077641.1 312 ATDIKKMKKIGEgREWLAFNCMQGLPHMG--ERRSRSHVIEFLRVAKELLADsatyegIITIGDGDAGERLKsciGYGLFFEGYLNHYQALCESM 404
                     54433333444489**************8..344444579********9886445555899999997763332233444456689********** PP

            GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgW 362
                     e ++p    e+ri +E  ++++ ++++   ++ e      ++++ ++     G+k ++l++++  +ak ++++ +s  y v+   ++++++vl W
  XP_028077641.1 405 EWNFPVYLaEARIAMESLFVAPFVSSMSWLQKWE------EVREGSDLHAGIGLKGLRLTKENLVEAKEMVKEGESS-YAVKiegQNKNEMVLEW 492
                     *****877699*******9999888877777666......56667889999**********************9955.7777657789******* PP

            GRAS 363 kdrpLvsvSaWr 374
                     ++ pLv vS Wr
  XP_028077641.1 493 RGTPLVRVSTWR 504
                     ***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    
MDGHMDEQEF SFSFTTIEDS SQTSSDQFLT TIFSNEFVEY SMSGDELRFT SPMENIADDM  60
EGIESILDSE LEDMCRWLTE CEGEGSFASQ PLFVEGEDVW SPSQSTKSSE ASMVMPSVLT  120
SLTLPGHDIE IDSQLSIQHL LKAYGEAMEM EHKELAEVIV KSIIEKVSPV GETLERLAFN  180
LFKYGGQQGQ YLKQESSKNL KTAFKAFYQN FPYGRFAHFT ANLAILEAMP ANAETVHIVD  240
FHTREGVQWA PMIEAVAQLR KALRITLIKS GEDCGTDSSN WRFEETQRRL CDHARSCGLN  300
LKVEEVRIKD LATDIKKMKK IGEGREWLAF NCMQGLPHMG ERRSRSHVIE FLRVAKELLA  360
DSATYEGIIT IGDGDAGERL KSCIGYGLFF EGYLNHYQAL CESMEWNFPV YLAEARIAME  420
SLFVAPFVSS MSWLQKWEEV REGSDLHAGI GLKGLRLTKE NLVEAKEMVK EGESSYAVKI  480
EGQNKNEMVL EWRGTPLVRV STWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-22GRAS family protein